Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01377 ATGGATTCGGCGACAACAGCTCCTCCCCCGTTGCAGGAGCTGGAGCTCGACAACCTCAAAGCTCTCAAAGTCCTAGGAAAAGGTGCCATGGGTACCGTCTTCCTCGTCCACGACACCACCACCAACAACTTCCCCTTCGCCTTGAAAGTCGTCGACAAAACCTGCATCCACGCAAAGCGCGACGCCGAACGCCGCGCGCGTTGGGAAATCCAAGTCCTTTCAACTCTCTCCCACCCCTTTCTTCCTACCCTCCTGGGATCATTCGAGTCCCCACAGTTCTTAGCCTGGGCCCTACCCTACTGTCCCGGCGGCGACCTCAACGTCCTCCGCTACCGTCAAACCGACCACGCCTTCTCCCCCACCGTCATCCGCTTCTACGTAGCAGAAATCCTCTGCGCGCTCCACCACCTCCATTCTATGGGCATAGCATACCGTGACCTCAAACCAGAAAATGTCCTCATCCAAAACAACGGCCACATCACCCTCACCGATTTCGACCTCTCCCGCAAACTCACCCTCAAACCCAAACCCCTTCTTCCTTCGATGCCCGTGCCCAATCCCAAGCTCAAAGAACCCCGCCGAAAACACCGCCGCAACTTTTCCCGCTGGATCCCCCTCCCTGCCCTCGACGGGAACCGTAGGAAGGCCAACTCCAACGCCCTCAAGAAAGCCAAGTCCGCGCGAGTCAGCCCGGTGAGTAGACGAAAACTGAGTTTCTCCAACGGCGAGCGCTCCAACTCGTTCGTCGGCACCGAGGAGTACGTCTCGCCGGAGGTCGTTCGCGGCGACGGCCACGAGTTCGCCGTTGATTGGTGGTCCCTCGGAATACTCATCTACGAAATGCTCTACGGTACGACGCCGTTCAAAGGCAAGAATCGTAAGGAAACGTTCCGCAACGTCCTCACCAAGGCGCCGGAGTTCGTCGGCAAGAGAACCGCGCTAACGGACCTTATCGAGAAGCTCCTGACGAAGGATCCGACGAGGCGGTTGGGTTACACGCGCGGCGCTGCGGAGATCAAGGAGCATGAGTTCTTCCGAGGGGTGAAATGGGACCATTTAACCGAGGTTGTGCGGCCGCCGTTCATTCCGTCGCGGGACGATGGCTCCGCGGAGTCGATGGAGAAGCTTTTCGCCGGGAATTCTGGCATGGATATTAGGGGTTACTTTCAGAATCTTAGATCGGTGCCACCGTCACCGTCAGGGTCACCGTCGGCGTTCCCATCATCGCCGCCGTGGCAGTTAAAGAGAAATGTTTCTCTAACGGAATTCTAA 1272 0.5778 MDSATTAPPPLQELELDNLKALKVLGKGAMGTVFLVHDTTTNNFPFALKVVDKTCIHAKRDAERRARWEIQVLSTLSHPFLPTLLGSFESPQFLAWALPYCPGGDLNVLRYRQTDHAFSPTVIRFYVAEILCALHHLHSMGIAYRDLKPENVLIQNNGHITLTDFDLSRKLTLKPKPLLPSMPVPNPKLKEPRRKHRRNFSRWIPLPALDGNRRKANSNALKKAKSARVSPVSRRKLSFSNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWSLGILIYEMLYGTTPFKGKNRKETFRNVLTKAPEFVGKRTALTDLIEKLLTKDPTRRLGYTRGAAEIKEHEFFRGVKWDHLTEVVRPPFIPSRDDGSAESMEKLFAGNSGMDIRGYFQNLRSVPPSPSGSPSAFPSSPPWQLKRNVSLTEF 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01377 423 MobiDBLite consensus disorder prediction 390 413 - -
Vian5g01377 423 Gene3D Transferase(Phosphotransferase) domain 1 242 364 - -
Vian5g01377 423 Pfam Protein kinase domain 240 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g01377 423 Pfam Protein kinase domain 21 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g01377 423 FunFam Serine/threonine-protein kinase OXI1 105 173 - -
Vian5g01377 423 Gene3D Phosphorylase Kinase; domain 1 19 104 - -
Vian5g01377 423 ProSitePatterns Protein kinases ATP-binding region signature. 25 49 IPR017441 GO:0005524
Vian5g01377 423 Gene3D Transferase(Phosphotransferase) domain 1 105 171 - -
Vian5g01377 423 SUPERFAMILY Protein kinase-like (PK-like) 16 411 IPR011009 -
Vian5g01377 423 PANTHER FLIPPASE KINASE 1-RELATED 13 366 - -
Vian5g01377 423 FunFam Serine/threonine-protein kinase OXI1 243 364 - -
Vian5g01377 423 FunFam Serine/threonine-protein kinase UCNL 19 104 - -
Vian5g01377 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Vian5g01377 423 SMART serkin_6 19 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g01377 423 ProSiteProfiles Protein kinase domain profile. 19 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01377 Vian-Chr5 36384253 36385524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01377 14 423 AGC Kinase Gene Family AT3G20830 60.766 9.34e-168 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vian5g01377 Pkinase 2.3e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01377 - K08286 gmx:100785281 647.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00339 11 3203102 3204241 Vian5g01377 5 36384253 36385524 PCT