Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01376 ATGTTTTCAATGTTGGAAACTGGTGGAGAAGAGTCAGAGTCTACAAAATCGACCATAGCTAAGAGGGTGTCACAGTCACACATCATTTTAACTATTAAACCTGATTGGAATCTGATTAACACTCATAGCAGCAACGAAGTTCCAAAAGTGGCTGATTTTCTTGGAGTGAGCAAGTCTGAAAATCAGTCAGAGCTTGCTGCTTTAAACGAAATTCAGTCAAATGATTCAGATTATCTGTTCACAAACAACAGTCTGGTACCTTTGCAAAACCCCGTGGTGGACACACCAAGCAATGAGTATCAAGAAAATGCTAACAGTAACTTGCAATCGTTGACATTATCCATGGGAAGTGGTGGATATGATAAAGAAGAGAAAGCAGCTAGGGCTTATGATTTAGCAGCACTGAAGTACTGGGGAACATCCACCACTACCAACTTTCCAATTAGCAACTACGAGAAGGAATTGGATGAAATGAAACACATGACCAGACAAGAATTTGTTGCCGCTATAAGAAGGCATATTGTGGTGGTGATTTGCAGGAAAAGTAGTGGTTTCTCTAGAGGTACTGAGGAAGAGGCTGCAGAGGCTTACGACATAGCAGCGATAAAGTTCAGAGGTCTCAACGCTGTCACAAACTTTGACATGAGCCGTTATGACGTGAAAGCTATTCTCGAAAGCAACACTCTCCCGATAGGAGGAGGCGCTGCAAAACGTCTGAAAGAAGCTCAAGCTCTAGAATCTTCTAGAAAACGTGAAGAGATGATTGCACTAGGCTCATCTACCTTCCAATATGGAACCTCAAGCTCTTCCAGGCTACACGCTTACCCTCTAATGCAGCACCACCAGTTCGAGCAACCTCAACCTCTGCTAACCTTGCAAAACCATGACATAAGCTCTCACTTCTCTCACCAGGACCCTTTACACCAGGGTTACATCCAAACGCAGCTTCAGTTGCACCAGCAGAGTGGTGTTTCTTCTTACCTCCAGAATAATCCTCAGTTCTACGGCGGCTACCTTCAGAACCACCCTGCATTGCTTCAGGGAATGATGAACATGGGGTCTTCTTCTTCTTCATCTGTGTTGGAGAATAATAACAACAATAATAGCAGTGTTGGTGGGTTTGCAGCAGGGAGTGGGTTTGGTATGGCTTCGAATCCATCGTCGGGTAACGCAGTGGGCGCGGCGGAGGAACTTGGCTTGGTGAAGGTTGACTATGACATGCCAGCCGGAGGTTACGGCGGTTGGTCGGCGGGGGCGGCGGAATCCATGCAGACGTCAAATGGTGGGGTGTTCACAATGTGGAATGAGTGA 1311 0.4592 MFSMLETGGEESESTKSTIAKRVSQSHIILTIKPDWNLINTHSSNEVPKVADFLGVSKSENQSELAALNEIQSNDSDYLFTNNSLVPLQNPVVDTPSNEYQENANSNLQSLTLSMGSGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKELDEMKHMTRQEFVAAIRRHIVVVICRKSSGFSRGTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKREEMIALGSSTFQYGTSSSSRLHAYPLMQHHQFEQPQPLLTLQNHDISSHFSHQDPLHQGYIQTQLQLHQQSGVSSYLQNNPQFYGGYLQNHPALLQGMMNMGSSSSSSVLENNNNNNSSVGGFAAGSGFGMASNPSSGNAVGAAEELGLVKVDYDMPAGGYGGWSAGAAESMQTSNGGVFTMWNE 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01376 436 SUPERFAMILY DNA-binding domain 118 149 IPR016177 GO:0003677
Vian5g01376 436 SMART rav1_2 52 153 IPR001471 GO:0003700|GO:0006355
Vian5g01376 436 SMART rav1_2 178 220 IPR001471 GO:0003700|GO:0006355
Vian5g01376 436 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 189 308 - -
Vian5g01376 436 ProSiteProfiles AP2/ERF domain profile. 118 147 IPR001471 GO:0003700|GO:0006355
Vian5g01376 436 SUPERFAMILY DNA-binding domain 189 216 IPR016177 GO:0003677
Vian5g01376 436 ProSiteProfiles AP2/ERF domain profile. 136 214 IPR001471 GO:0003700|GO:0006355
Vian5g01376 436 Gene3D AP2/ERF domain 99 149 IPR036955 GO:0003700|GO:0006355
Vian5g01376 436 Gene3D AP2/ERF domain 159 216 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01376 Vian-Chr5 36361901 36375841 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01376 118 436 AP2-EREBP Transcription Factor Family AT3G20840 54.663 3.30e-104 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01376 K09285 - gmx:100170752 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01376 5 36361901 36375841 Vian5g01376 5 36361901 36375841 ECH