Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01371 ATGACCAATTCCTACAGATCCAATGACCTTAACTTTTGGTTGGACCTCAATTCACCATGTCTTCTCTCTTCTCCTTCTTCGTCTCCTCCTCCCATCAATCCATCATTCTATTTTCCTTCCAGTTATCATACCTACACTTCTCCTCCTCCTCATCAAACAAAACTCCTTCCTTTCCTTCATCTAAGACATCAACAACAACAAGAAGATGATGAAGAAGAAGAAGAAGAATGTCTTGAATCTTCATTCAGTGCCATGGAAGTTGACAAGAAAAAGAAAGAGCTAAGTACATCATCATCATCCAAGTGCTTAGACGAAGAGGATGCTGTCACTGTGGCTTTACACTTAGGGCTTCCAAGCACTGCTGCATCTGCTGATTTAGCTTCAAGCCTATACTCAGCAGAGGTTTCAGACAAAGGAGAAAAAACCACTGATGCTTCGGGGTTACTGACAGATAGAATTAACAGAGGACAATATTGGATCCCTACTTCTGCTCAGATTCTGATTGGTCCAACACAGTTCGCATGCCCTCTTTGTTTCAAGACGTTCAACAGATACAACAACATGCAGAATTTTCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGACCAGAGTCTCTAAGGGGAACACAACCAACAGCTATGCTAAGGCTCCCTTGCTATTGCTGTGCTCCAGGATGCAAGAACAACATCGACCATCCGAGAGCAAAACCACTCAAAGACTTCAGAACCCTTCAAACACATTACAAGAGAAAGCATGGGACAAAGCCTTTCGTGTGCAGAAAATGTTGCAAAACCTTTGCTGTGAGGGGTGATTGGAGAACTCATGAGAAGAACTGTGGGAAACGCTGGTATTGCTCTTGTGGCTCTGATTTCAAGCACAAAAGGTCCCTCAAAGATCATATCAAGGCATTTGGATATGGACATACGGCTCATGGAAATGACTGCATGAACCTTGACCAAGATGATGATCAAGCAGGTTCTGAAATTGAACAAGAAAATTAA 1011 0.4263 MTNSYRSNDLNFWLDLNSPCLLSSPSSSPPPINPSFYFPSSYHTYTSPPPHQTKLLPFLHLRHQQQQEDDEEEEEECLESSFSAMEVDKKKKELSTSSSSKCLDEEDAVTVALHLGLPSTAASADLASSLYSAEVSDKGEKTTDASGLLTDRINRGQYWIPTSAQILIGPTQFACPLCFKTFNRYNNMQNFQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGTKPFVCRKCCKTFAVRGDWRTHEKNCGKRWYCSCGSDFKHKRSLKDHIKAFGYGHTAHGNDCMNLDQDDDQAGSEIEQEN 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01371 336 PANTHER ZINC FINGER PROTEIN WIP2 25 335 IPR043584 GO:0003700|GO:0010468
Vian5g01371 336 Gene3D Classic Zinc Finger 217 307 - -
Vian5g01371 336 MobiDBLite consensus disorder prediction 63 82 - -
Vian5g01371 336 FunFam Zinc finger protein WIP2 229 311 - -
Vian5g01371 336 SUPERFAMILY beta-beta-alpha zinc fingers 242 280 IPR036236 -
Vian5g01371 336 Coils Coil 61 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01371 Vian-Chr5 36314171 36316295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01371 109 334 C2H2 Transcription Factor Family AT3G57670 64.591 8.91e-115 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian5g01371 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01371 - - gmx:100802239 484.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00341 11 3214370 3216386 Vian5g01371 5 36314171 36316295 PCT