Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01370 ATGTCCCTATCAAAAAACCTCAAGGACTTCGTACCCTCCCATGTGAAACCTTTCCACGTTTGCATTTTAGGAGTAGCTGAATCATATGAGGCGGATGGTCTCGTACTGCAGATTACTTGTCTGGCAGAAGGATTCAAAATGAGTTGGAACCCACACATGGATGTCCATTACAATAGCATTAGTTATCCCTATAATACAGCAGGAAGCTTTATCGAATATTTTGAAGGTCTTACCTATGAACATGTCAACTTCATTTTTTCTGGTGCATCACATGCTCAGGAAAGTTCATACCCTTCAAATTCAAGCTTTTACAAGTTTGGACTATCTGAACCTGATAATTCATCATACTATCGTTACAGTCATGGTTATGAGGTAAATCATCACGAACCACTGGTGGATGAGTATAGGAGACCTTCAGAGAACTCATTGACAATCAACGAACAGACAGCAGCAGTAAACACAGAATGGGTTGAAGGTGGCAACACTGACACACGAGACAATTCTATTGAATGTCCTCGAAGACATCACAGTAATTCAAGTGATTATCAGGTCATTTGGCAAGACAATATTGATCCCGACAACATGACCTATGAGGAACTACTTGAATTAGGTGAAGCTGTCGGAACTCAGAGCCGTGGTCTCACCCAAGAACAGATCTCCTCACTCCCAGTGTCGAAGTTCAAATGTGGGTTCTTCTTGAGGAAGAAGTCTCGGGGTGAGAGATGTGTGATTTGCCAGATGGAATATAAAAGAGGGGACAAGCGTATCACCTTGCCATGTAAACATCTTTATCACGCTAGTTGTGGGAACAGATGGCTCAGCATCAATAAGGCTTGCCCAATATGTTACACAGAAGTGTTTGCCGACAAGTCAAAGCACAAATAA 885 0.4203 MSLSKNLKDFVPSHVKPFHVCILGVAESYEADGLVLQITCLAEGFKMSWNPHMDVHYNSISYPYNTAGSFIEYFEGLTYEHVNFIFSGASHAQESSYPSNSSFYKFGLSEPDNSSYYRYSHGYEVNHHEPLVDEYRRPSENSLTINEQTAAVNTEWVEGGNTDTRDNSIECPRRHHSNSSDYQVIWQDNIDPDNMTYEELLELGEAVGTQSRGLTQEQISSLPVSKFKCGFFLRKKSRGERCVICQMEYKRGDKRITLPCKHLYHASCGNRWLSINKACPICYTEVFADKSKHK 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01370 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 288 IPR013083 -
Vian5g01370 294 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 50 288 IPR033276 GO:0004842|GO:0016567|GO:0046621
Vian5g01370 294 SMART ring_2 242 282 IPR001841 -
Vian5g01370 294 SUPERFAMILY RING/U-box 241 289 - -
Vian5g01370 294 FunFam E3 ubiquitin ligase BIG BROTHER 204 287 - -
Vian5g01370 294 Pfam Ring finger domain 241 282 IPR001841 -
Vian5g01370 294 ProSiteProfiles Zinc finger RING-type profile. 242 282 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01370 Vian-Chr5 36302268 36307778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01370 51 293 C3H Transcription Factor Family AT3G63530 43.775 2.87e-66 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01370 K19045 - gmx:100793907 507.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00345 11 3248883 3251790 Vian5g01370 5 36302268 36307778 PCT