Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01357 ATGAGGAAGCCCGAGGTGTCTGCAAAAAACAGCTCCAACATTAATAACAAGCTTCGAAAGGGCTTGTGGTCACCTGAAGAAGATGACAAGCTCATGAACTACATGCTAAACAGTGGACAAGGTTGTTGGAGCGATGTAGCCAGAAATGCTGGCCTTCAAAGGTGTGGCAAAAGTTGTCGCCTTCGATGGATCAATTACTTGAGGCCTGATCTCAAACGAGGTGCATTCTCTCCACAAGAAGAGGAACTCATCGTCCATTTGCATGCCCTTCTCGGAAACAGATGGTCTCAAATAGCGGCGCGCTTGCCTGGGAGAACTGACAATGAAATTAAGAATTTTTGGAATTCAACAATAAAGAAAAGACTGAAGAACATCTCATCCAACACCTCACCAAACGGAAGCGAGTCCTCGTATGAGCCTAACAAAGACCTTAACATGGCAGGGTTTACTACTTCTAATACCCATCAAGATCAACATGCTGATTTTATGCCTATGTTCAATTCATCATCATCTCCATCACCATCCATGCATGCCACAGTTCTCAATTCCATTATTGACAGGTTGCCTATGCTAGATCATGGACTAAACGTGCCAGTTTCCGGTGGATTCTTCAATGCTACAGGGCCATGCTTCTCAACGCAAAGTGGAGTTGATCACAAAGGTTTATATTTGGAAAATGGAGGAGTATTTGGGAGTGTAAATATTGGGGCAGAAGGGGATATGTATGTTCCTCCTCTAGAGAGTGTTAGCACTACTTCTGACCATAACCTGAAAGTGGAGAGCACCTGCAACACAGATACTAACAATAGTTACTTTGATGACATAAACAGCATCATCCTTAATAACTGCAGCAACAAGAGAACTGAAAATAGGGCTGGAGTGGAGAATTTATTTCAACAAGAGTTAACCATGGGAGAGTGGGACTTGGAGGAGTTGATGAACGATGTTTCATCCTTTCCCTTTCTTGATTTTTCAAATATCCAATAA 987 0.4265 MRKPEVSAKNSSNINNKLRKGLWSPEEDDKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHALLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNISSNTSPNGSESSYEPNKDLNMAGFTTSNTHQDQHADFMPMFNSSSSPSPSMHATVLNSIIDRLPMLDHGLNVPVSGGFFNATGPCFSTQSGVDHKGLYLENGGVFGSVNIGAEGDMYVPPLESVSTTSDHNLKVESTCNTDTNNSYFDDINSIILNNCSNKRTENRAGVENLFQQELTMGEWDLEELMNDVSSFPFLDFSNIQ 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01357 328 MobiDBLite consensus disorder prediction 124 154 - -
Vian5g01357 328 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Vian5g01357 328 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Vian5g01357 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Vian5g01357 328 FunFam MYB transcription factor 17 73 - -
Vian5g01357 328 PANTHER MYB DOMAIN PROTEIN 55 15 268 - -
Vian5g01357 328 FunFam Transcription factor MYB46 74 143 - -
Vian5g01357 328 CDD SANT 75 115 IPR001005 -
Vian5g01357 328 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Vian5g01357 328 Gene3D - 75 144 - -
Vian5g01357 328 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Vian5g01357 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Vian5g01357 328 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Vian5g01357 328 Gene3D - 17 73 - -
Vian5g01357 328 CDD SANT 23 67 IPR001005 -
Vian5g01357 328 SMART sant 19 69 IPR001005 -
Vian5g01357 328 SMART sant 72 120 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01357 Vian-Chr5 36176977 36178903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01357 1 321 MYB Transcription Factor Family AT5G12870 45.652 8.14e-77 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian5g01357 Myb_DNA-binding 9.5e-12 CL0123