Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01345 ATGGAAAACGGGGAAGCCCCAATCTTGGTGGAAGAGAGGATAATGCAGGAAATTGAGATACCCATTGCATCTGAAAGACTTGATGTTCTTCCTATGAAGGCAGAGTCATCGTGTTGTTCTGGCTGTCCTTTTTCTGGACATGAAAATAGTGTTGTGACATCAAAAGAGTCTTCAAAGTCGGCAAAGAAACTTTGTGGTCTTATTGTTTTCTATGGTATTGTCATGGTTGTGGAACTTATTGGTGGAATAAAAGCTCACAGCCTAGCTGTCATCGGTGATGCAGCTCACTTGCTTTCTGATATTACTGGATTCTCTATCTCTCTCTTTGCAGTGTGGGCTTCGGGTTGGGAGGCAACACCACATCAATCTTTCGGATACAATCGTCTCGAGGTTTTGGGGGCTCTTATATCTGTTCAGTTAATTTGGTTGATATCTGGTTATTTGATATATGAAGCAGTTGGTAGAATTCTTCTACAAGAGGCCAGTGTGAATGGAAAGGTCATGCTTGCTATTGCAACATTTGGATTTGTTCTTAACTTTATCATGGTTGCATGGATTGGTCATGATCACGGTCATCATCATCATCATCATCATGGTTGTGAAGACTCTGGTCATGATCATAGTCATCATCACTGCCACACAGACCATGATCATGGGAATAAGGAGCTATCTATGATAAGTGACGAGGAGAGCGTTACCCTGGTTTCAAGTAATCACAGAAATACAAATGTCTTGAACCTAAATCTTCAGGGGGCGTATTTGCATGTCATGGCTGATATGATTCAATCTGTTGGAGTGATGATTGCTGGAGCCATAATATGGGCTGAACCTAAGTGGTTTATAGTTGATCTTGTGTGCACTCTTATATTCTCTGTTTTATCTTTAAGTGCTACCCTTCCCATGCTTAGGAATATTTGTGGCATTCTCATGGAAAGGACCCCAAGTGAGATAGATATCAGCAAGCTGGAAAATGGCATTAGAAATATCAAGGGAGTGCAGGATGTTCATGACTTGCACATTTGGGCTATAACTGTTGGAAAACTTGTTCTTTCTTGCCATGTAGTGGCTGAACCTGGCATAAGTTCCATTGATTTACTAGGCATGATTAAACACTACTGTGAAAAAACATATCAAATACAGCATGTAACCATACAAATTGAGTAA 1164 0.4055 MENGEAPILVEERIMQEIEIPIASERLDVLPMKAESSCCSGCPFSGHENSVVTSKESSKSAKKLCGLIVFYGIVMVVELIGGIKAHSLAVIGDAAHLLSDITGFSISLFAVWASGWEATPHQSFGYNRLEVLGALISVQLIWLISGYLIYEAVGRILLQEASVNGKVMLAIATFGFVLNFIMVAWIGHDHGHHHHHHHGCEDSGHDHSHHHCHTDHDHGNKELSMISDEESVTLVSSNHRNTNVLNLNLQGAYLHVMADMIQSVGVMIAGAIIWAEPKWFIVDLVCTLIFSVLSLSATLPMLRNICGILMERTPSEIDISKLENGIRNIKGVQDVHDLHIWAITVGKLVLSCHVVAEPGISSIDLLGMIKHYCEKTYQIQHVTIQIE 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01345 387 Pfam Cation efflux family 68 310 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Vian5g01345 387 SUPERFAMILY Cation efflux protein transmembrane domain-like 61 311 IPR027469 -
Vian5g01345 387 NCBIfam cation diffusion facilitator family transporter 62 387 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Vian5g01345 387 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 314 387 IPR036837 -
Vian5g01345 387 Gene3D Cation efflux protein transmembrane domain 60 309 IPR027469 -
Vian5g01345 387 MobiDBLite consensus disorder prediction 196 220 - -
Vian5g01345 387 MobiDBLite consensus disorder prediction 199 220 - -
Vian5g01345 387 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 35 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01345 Vian-Chr5 36067462 36068625 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01345 16 387 Inorganic Solute Cotransporters AT2G29410 49.333 7.47e-117 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01345 K14689 - gmx:100777590 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01345 5 36067462 36068625 Vian5g01345 5 36067462 36068625 ECH