Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01325 ATGAGTTTTGTCTTCCGAGGGAGTAGGGGAGATATTGAAAGTGGATTTTCAGAATATGTTCCTGAAAGAACCTTGATGAGGGTTCATCCAGCTCGCCCAGTTAATGGCAATTCTTTAGCTTTTCTTATCACAGTTATTTTGATATTCATGATATTAAACTCCCCTCAAATGCTACATCATTTTTTGCTCTGGGTTGTACTGGCTATCTTTGTGATGGCTACAAGTCTGAGGATGTATGCAACTTGTCAACAACTTCAGGCACAGGCTAGGGCTCATGCTGCAGCAGCCTCTGGGTTGCTTGGCCATACTGAACTCCGTCTTCACATGCCACCATCGATTGCAATTGCAACCAGAGGAAGACTGCAGGGACTTAGACTTCAGCTTGCACTTCTTGACCGTGAATTTGATGAGCTAGATTATGATACTTTGAGAGCTCTTGACACTGATACTGCTCCTAGTACCCATTCAATGACTGAGGAAGAGATAAATGCCTTGCCTATTCACACATATAAAATTCCAGTCCCACCAAAGGATGGCTCAGCCGGTCTGGCATCCTCTTCAGGTGCAGCTGAGATTAAACAAGAATCTGGAGGAACAGAGGCAGGTATCAGAGGCTCAGAAGATGAGCTGACATGTACTATATGCTTGGACCAAGTCAAGAGGGGGGAGCTTGTTCGTAGCTTACCATGCTTGCATCAGTTTCATGCTAACTGCATTGATCCTTGGCTCCAGCAACAAGGGACATGTCCTGTGTGCAAATTAAGGATAGGGTCGGGAAGTGGGGGAACCAGGGAGAGCGAATCCGATGGTTCAGATATTGCGTAA 825 0.4558 MSFVFRGSRGDIESGFSEYVPERTLMRVHPARPVNGNSLAFLITVILIFMILNSPQMLHHFLLWVVLAIFVMATSLRMYATCQQLQAQARAHAAAASGLLGHTELRLHMPPSIAIATRGRLQGLRLQLALLDREFDELDYDTLRALDTDTAPSTHSMTEEEINALPIHTYKIPVPPKDGSAGLASSSGAAEIKQESGGTEAGIRGSEDELTCTICLDQVKRGELVRSLPCLHQFHANCIDPWLQQQGTCPVCKLRIGSGSGGTRESESDGSDIA 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01325 274 CDD RING-H2_PA-TM-RING 211 253 - -
Vian5g01325 274 PANTHER TARGET OF ERK KINASE MPK-1 1 258 - -
Vian5g01325 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 264 IPR013083 -
Vian5g01325 274 MobiDBLite consensus disorder prediction 176 203 - -
Vian5g01325 274 Pfam Ring finger domain 211 253 IPR001841 -
Vian5g01325 274 ProSiteProfiles Zinc finger RING-type profile. 212 253 IPR001841 -
Vian5g01325 274 SUPERFAMILY RING/U-box 207 257 - -
Vian5g01325 274 SMART ring_2 212 252 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01325 Vian-Chr5 35931074 35934250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01325 1 274 C3H Transcription Factor Family AT3G55530 68.231 7.20e-125 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01325 K16283 - gmx:100805406 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01325 5 35931074 35934250 Vian5g01325 5 35931074 35934250 ECH