Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01319 ATGCTCTCCATGGATTCCCTTTTGGACAATTTTCCTGGTTCGGTAAATGGGTTCATATCTGAAAACGATTCTGTCTCGTTGTTTACGAATCAGAACAGGGTAAGTGAGTTCAAGTTGGATGATTCATCTGTCTCGGTGTTTACGAATCCGAACGGGGGAAGGGAATTCAAGTTGGATGATTCGCGTTCCCCGTCAGAGTCTGCCTCTGATGATGCTCCCTCTTCTGGGACAAGCTCTGACGGAGAACACACAGAGAGTACTAAACTCTGCAATCCCATGCTCAGGTTTATAAGTGATATCCTCATGGATGAAGAGGATGATTTGGAGCGCAAGCCCTGCATGTTGCAGGATTGTTTGAGACTCCAGGCTGCTGAAAAATCATTCTATGATGCTTTGGTTCATAGTTACCCATCATCACCTCGTCAATTTAACGATAACCCTGACCCAGATGATAATTTTGGTGGAACCACTAGTTCTGAGAGTTACGGCAGTTATACCACTGACCATTCATGCGAGTCTGATAAGTTTAACGGTGCTGGTGATTTTGAGTCTTATTTGCTACAAAGATCGTTGCATAATTCTCCGGAACACGCTTATGTTACTCCTGATCTGATTAGAGAGGCACAAGCTGGGTTCCAATTTTCAAATGGAGCTTGGAATTTGATTCAGTCGCAGAACAAGGCGGGCGTAATTGAAGAGAGTGTGACGAGGACAGGCAAAGGATCAAGGGAGAAGAGGAGCCATCTCATGAAAGATGATGTCTCACATGAAGAAGAGGAGAGAAGCAATAAGCTTTCAGCTGTCTACTCTGATGATTCGGAGTCATGTAGCATGTTCGATGAAGTGCTGCTTTGCAATGATGGCAAGAGTCCAGCCTTTTGTAAATCTGACCGTGAACCTTCATCATTACAGCTTGCTGATTCAGGAGGATCTAATGGGAAGAAAACACGTTCGAAGAAAGGTTCCAACAAGGGAAAAAATGCAAGAACAACGGTGGATTTATGGACTTTGCTAACTCAATGCGCACAAGCTGTGGCTAGCTTTGACCCAAGGACTGCAAATGAAATCCTCAAGCAGATTAGGCAGCACTCTTCACCTTTAGGCGATGGACTTCAGCGCTTGGCTCACTACTTTGCCGATGGCCTTGAGACAAGGTTAGCTGCTGGGACACCAAAGTTCATGCTGTTTCAGTCAGCATCTGCTGCAGATATGTTAAAAGCTTACAGAGTGTATGTCACATCATCACCATTTCACTGGATGTCATTTTTCATGGCTAACCGTACTATTCTGAAGTTTACACAAAGTGAAAGCAGTATTCACATTATTGACTTTGGGATTAGCTATGGTTTCCAGTGGCCTTGCCTCATCCAACGGCTTTCACAGAGACCAGGCGGTCCTCCAAAGATTCGTATAACAGGAATTGATTTTCCTCAGTCAGGGTTTAGGCCAGCTGAAAGGGTAGAGGAGACGGGGCGACGCTTAGAGAAGTACTGCAAGAGATTTGGAGTCCCTTTTGAGTACAATTGCCTTGCTCAGAAATGGGAAACCATAAGACTTGAGGACCTCAAACTTGATAGGAGTGAAGTAACTGTGGTTAACTGTATGTACAGATTGAAGAACCTGTCGGATGAAACTGTGACTGTAGACTGTCCTAGAGATGCGGTGCTGAGGTTGATCAGGAGGATCAATCCGACCATCTTCATGCATGGGGTTGGCAATGGCACCTACAATGCACCATTCTTCTTGACAAGGTTCAGGGAAGCACTCTTCCACTTCTCAGCATTGTTTGATATGTTTGAAGCTAATGTGCCTCGGGAAGATCCATCTAGACTTATGTTTGAGAAAGGGTTGTTTGGAAGGGACGCAATCAATGTCATAGCATGTGAGGGGGCAGAGAGGGTTGAAAGGCCAGAGACCTACAAGCAATGGCATGTTAGAAACCAGAGAGCAAGGTTCAAGCAACTTTCATTGAACAGAGACCTCGTGAACAAAGTAAAGGAAATGGTGAAGAAGGAATATCATAAAGATTTTACAGTAGATGAGGATGGCAAGTGGGTTTTGCAAGGATGGAAAGGACGTATTCTTTTTGCTCTTTCTTGTTGGGTTCCTGCTTGA 2115 0.4463 MLSMDSLLDNFPGSVNGFISENDSVSLFTNQNRVSEFKLDDSSVSVFTNPNGGREFKLDDSRSPSESASDDAPSSGTSSDGEHTESTKLCNPMLRFISDILMDEEDDLERKPCMLQDCLRLQAAEKSFYDALVHSYPSSPRQFNDNPDPDDNFGGTTSSESYGSYTTDHSCESDKFNGAGDFESYLLQRSLHNSPEHAYVTPDLIREAQAGFQFSNGAWNLIQSQNKAGVIEESVTRTGKGSREKRSHLMKDDVSHEEEERSNKLSAVYSDDSESCSMFDEVLLCNDGKSPAFCKSDREPSSLQLADSGGSNGKKTRSKKGSNKGKNARTTVDLWTLLTQCAQAVASFDPRTANEILKQIRQHSSPLGDGLQRLAHYFADGLETRLAAGTPKFMLFQSASAADMLKAYRVYVTSSPFHWMSFFMANRTILKFTQSESSIHIIDFGISYGFQWPCLIQRLSQRPGGPPKIRITGIDFPQSGFRPAERVEETGRRLEKYCKRFGVPFEYNCLAQKWETIRLEDLKLDRSEVTVVNCMYRLKNLSDETVTVDCPRDAVLRLIRRINPTIFMHGVGNGTYNAPFFLTRFREALFHFSALFDMFEANVPREDPSRLMFEKGLFGRDAINVIACEGAERVERPETYKQWHVRNQRARFKQLSLNRDLVNKVKEMVKKEYHKDFTVDEDGKWVLQGWKGRILFALSCWVPA 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01319 704 ProSiteProfiles GRAS family profile. 325 702 IPR005202 -
Vian5g01319 704 MobiDBLite consensus disorder prediction 234 266 - -
Vian5g01319 704 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 263 696 IPR005202 -
Vian5g01319 704 MobiDBLite consensus disorder prediction 296 327 - -
Vian5g01319 704 MobiDBLite consensus disorder prediction 237 266 - -
Vian5g01319 704 MobiDBLite consensus disorder prediction 301 316 - -
Vian5g01319 704 MobiDBLite consensus disorder prediction 67 86 - -
Vian5g01319 704 Pfam GRAS domain family 336 701 IPR005202 -
Vian5g01319 704 MobiDBLite consensus disorder prediction 50 86 - -
Vian5g01319 704 MobiDBLite consensus disorder prediction 138 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01319 Vian-Chr5 35894824 35896938 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01319 245 704 GRAS Transcription Factor Family AT1G07530 55.889 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vian5g01319 GRAS 8e-114 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01319 - - gmx:100815586 1075.08