Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01316 ATGGATCCACGTTTCGAGTCCAATTTCATCAACGGTTTTAAACCTAACAACCAAGTGTCCAACACGGTTGTTGTAGAGGATCAGTTCCTTGTCCCTGTTAATGGGATGATGAGACCCTTCGAGTTTGGATTCAGGGATAACTCGTTAATTCTTCAACCTGATCCAAACGTTGCTCAGAACTGTGTTTCCTTTGCCACCGACGAGGAGTCTCCACTGGACGAGATTGATTTTTCTGCTACTGTCTTACGCTACATAAACCAAATGCTTATGGAAGAGGACTTGGAGGCGAAGTCGTGTATGTTTCATGATTCCTTGGCTCTCCAAGCTGCTGAGAAATCATTCTATGAGGCCATTGGTGAGACACACCCTTCTTTAATAAAAACCTATCACAACGTAGACAGCCCTGAGGACAGTAGTTTCAGTGATTATGGCAGCAGTGGTACAGCCACTAGTAATGGTAACTCGATTGAGTCTCATTGGGGTAACGTTGATCTTACTGACTATAAGCCTTCCATACTGCAAACCACTTTTCCCACTGACTTTGTTTTCCAGGCCAGTTCAATCCAATCTTCTATGAACACCACAATCAACTTCAGTGTTAACGATAGTGGATTCTTGCATAGTTCCACTGCGGCTGGAATTTTGGATCCAACCTTGTTTAGCAAGAGTGAATCTGTTCTGCAATTTGAGAGGGGTGTGGAGGAAGCCAACAAGTTCCTACCTAAAGGGAATCCTTTGGTTGTTGACTTGGAGAGCCCCTCTTTGAGGATGGTTCCACATATCCAAGAGGAAATTAAGGTAGAGAGAGATGAAATTTTTGCTGAGTTAAGAGGAAGGAAGAATCACGGGCGGGAAGATGAAGAAGCAGATTCGCAAGATGGGAGAAGCAACAAGCAGTCTGCTGTGTACATTGATGACAGTGAGATATCAGAATTGCTTGATAAGGTTCTGCTGGGCACTGGATGCAGAAAGGAGCCAGCTCCTTTGTGTATTTGTTACGCAGACCTTCCTAATGGAGCATCCTCGAGTGCACAGAAGAAATTAGAAGAAACAAACAAGTCTGGTGGTGGGAAGAGCCGTGTTAAGAAGCAAGGCAACACAAAAGGAGTTGTGGATCTGAGGACATTGTTGATTCTATGTGCACAAGCTGTTTCTTCTGATGATCGTGTGTCTGCTAATGAATTGCTGAAGCAGATAAGGCAACATACTTCTCCGCTGGGTGAGGGGACTCAGAGGCTGGCCCATTGCTTTGCAAATGCTCTTGAAGCACGTTTGGCTGGGACAGGCACTCAGATTTATACTGCTTTATCATACAAAAGAAACTCTGCAGCAGACATGGTGAAAGCTTACCAAATGTATATTTCGGCTTGTCCATTCAAGAAGCTATCTATCATTTTTGCAAACCATACAATTTTGCAGCTAGCCATGGAAGTTGAATCTCTTCACATTATAGACTTTGGCATCCGTTATGGCTTCCAATGGCCAGCTCTTATTTATCGTCTATCAAAACGACTTGGGGGACCTCCCAAGCTGCGGATAACAGGGATAGAACTCCCACAACCTGGTTTCAGGCCAGCAGAGAGAGTCCAGCAGACGGGACGTCGCCTTGCAAGATACTGTGATCGGTTTAAAGTTCCATTCGAGTTCAATGCCATTGCACAGAAATGGGAAACCATCAGAGTTGAGGACTTGAAGATAAAGGAAAATGAACTTCTTGCAGTGAATACTATGTTTAGATTTCAGAATCTACTTGATGAGACAGTTGTGTTGAATAGTCCCCGGGATGCTGTTTTAAGTTTAATAAGGAAGGCAAATCCCACTATCTTTATACATGGTACTGTCAATGGGAGCTACAATGCTCCATTCTTTGTAACACGGTTCCGGGAGGCCCTTTTCCATTATTCTACTTTGTTTGATGTGCTTGATACTAATGTGAGTCGTGAAGATCCAATGAGGTTGATGTTTGAGAAAGAGTTCTTTGGTCGGAGGGTAATGAATGCTTTAGCTTGTGAGGGTTGTGAGAGGGTTGAGAGGCCCGAGACATACAAGCAATGGCAGGTTAGGAACACGAGAGCTGGATTTAGGCAACTGTCCTTGGATAAACATCTCATCAACAAATTAAGATCCAAGTTGAAAGATATTTACCACAGTGATTTCATGCTTCTTGAAGATGCCAACTTTATGCTGCAAGGTTGGAAGGGCAGAGTAGTTTATGCTTCATCTTGTTGGGTGCCTGCATAG 2241 0.4378 MDPRFESNFINGFKPNNQVSNTVVVEDQFLVPVNGMMRPFEFGFRDNSLILQPDPNVAQNCVSFATDEESPLDEIDFSATVLRYINQMLMEEDLEAKSCMFHDSLALQAAEKSFYEAIGETHPSLIKTYHNVDSPEDSSFSDYGSSGTATSNGNSIESHWGNVDLTDYKPSILQTTFPTDFVFQASSIQSSMNTTINFSVNDSGFLHSSTAAGILDPTLFSKSESVLQFERGVEEANKFLPKGNPLVVDLESPSLRMVPHIQEEIKVERDEIFAELRGRKNHGREDEEADSQDGRSNKQSAVYIDDSEISELLDKVLLGTGCRKEPAPLCICYADLPNGASSSAQKKLEETNKSGGGKSRVKKQGNTKGVVDLRTLLILCAQAVSSDDRVSANELLKQIRQHTSPLGEGTQRLAHCFANALEARLAGTGTQIYTALSYKRNSAADMVKAYQMYISACPFKKLSIIFANHTILQLAMEVESLHIIDFGIRYGFQWPALIYRLSKRLGGPPKLRITGIELPQPGFRPAERVQQTGRRLARYCDRFKVPFEFNAIAQKWETIRVEDLKIKENELLAVNTMFRFQNLLDETVVLNSPRDAVLSLIRKANPTIFIHGTVNGSYNAPFFVTRFREALFHYSTLFDVLDTNVSREDPMRLMFEKEFFGRRVMNALACEGCERVERPETYKQWQVRNTRAGFRQLSLDKHLINKLRSKLKDIYHSDFMLLEDANFMLQGWKGRVVYASSCWVPA 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01316 746 MobiDBLite consensus disorder prediction 276 300 - -
Vian5g01316 746 Pfam GRAS domain family 373 743 IPR005202 -
Vian5g01316 746 MobiDBLite consensus disorder prediction 276 294 - -
Vian5g01316 746 MobiDBLite consensus disorder prediction 344 365 - -
Vian5g01316 746 ProSiteProfiles GRAS family profile. 364 744 IPR005202 -
Vian5g01316 746 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 299 737 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01316 Vian-Chr5 35876481 35878721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01316 81 746 GRAS Transcription Factor Family AT1G07530 53.824 0.0 724
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vian5g01316 GRAS 5.7e-112 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01316 - - gmx:100815586 1215.68