Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01310 ATGGCAGTGCCAAGCATTTTGCTCTGCATTGTGCTTATCATCTCCTTAACATGGATGGTTGAAGCACGCATTCCGGGGATTTACGCCGGCGGTGCATGGGAAAGTGCTCACGCAACCTTCTACGGAGGATCCGATGCTTCCGGCACCATGGGTGGAGCGTGTGGGTACGGGAACCTGTACAGCCAAGGCTACGGTGTGAACACGGCGGCATTAAGCACGGCGCTTTTCAACAATGGCCTCAGCTGCGGCGCGTGCTTTGAGATAAAGTGCGCTAACGACAGACAGTGGTGTCACTCGGGAAGTCCTTCCATCTTCATCACAGCAACAAACTTTTGCCCTCCCAACTACGCTCTTCCAAACGACAATGGCGGCTGGTGCAACCCTCCTCGTCCTCACTTCGACCTCGCCATGCCCATGTTCCTTAAAATTGCCGAATACCGAGCCGGAATTGTCCCTGTTGCCTTTCGCCGAGTGCCATGTAGAAAGCACGGAGGGATAAGGTTCACCGTCAACGGATTCCGTTACTTCAACCTGGTGCTGATTAGCAACGTGGCAGGTGCGGGGGATATCGTGCGCACTTACGTGAAGGGGTCCCGAACCGGGTGGATGCCAATGAGCCGAAACTGGGGTCAGAACTGGCAGTCAAACGCGGTTTTGGTGGGGCAGACGCTGTCGTTTCGCGTGACGGGCAGCGACCGCCGCACCTCCACCTCGTGGAACATCGCTCCAGCCAATTGGCAATTCGGTCAAACTTTCATCGGAAAAAACTTCCGAGTCTGA 780 0.5551 MAVPSILLCIVLIISLTWMVEARIPGIYAGGAWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDRQWCHSGSPSIFITATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAFRRVPCRKHGGIRFTVNGFRYFNLVLISNVAGAGDIVRTYVKGSRTGWMPMSRNWGQNWQSNAVLVGQTLSFRVTGSDRRTSTSWNIAPANWQFGQTFIGKNFRV 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01310 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Vian5g01310 259 Gene3D - 165 257 IPR036749 -
Vian5g01310 259 SUPERFAMILY PHL pollen allergen 162 253 IPR036749 -
Vian5g01310 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Vian5g01310 259 SUPERFAMILY Barwin-like endoglucanases 11 183 IPR036908 -
Vian5g01310 259 Gene3D - 22 161 IPR036908 -
Vian5g01310 259 Pfam Lytic transglycolase 68 154 IPR009009 -
Vian5g01310 259 SMART dpbb_1 68 155 IPR007112 -
Vian5g01310 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Vian5g01310 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Vian5g01310 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Vian5g01310 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Vian5g01310 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Vian5g01310 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Vian5g01310 259 FunFam Expansin 165 257 - -
Vian5g01310 259 CDD DPBB_EXPA_N 33 160 - -
Vian5g01310 259 PANTHER EXPANSIN-A15 22 257 IPR002963 GO:0009664
Vian5g01310 259 FunFam Expansin 22 161 - -
Vian5g01310 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Vian5g01310 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Vian5g01310 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Vian5g01310 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Vian5g01310 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Vian5g01310 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664
Vian5g01310 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Vian5g01310 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Vian5g01310 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Vian5g01310 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01310 Vian-Chr5 35831596 35832791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01310 5 259 Expansin Gene Family AT2G39700 83.529 7.37e-163 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01310 - - gmx:100809139 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00384 11 3562338 3563281 Vian5g01310 5 35831596 35832791 PCT