Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01309 ATGAAGTGCTTCTACTTCTCCAACGCAGAGGACGAAGATTGCGTGGCAGCGGCACCGAGTTCGCGCGGTTCCACTTCGCGTGTGTCGTGGGCGCGTTCGCTCAGTCTCATGGACACGCGCAGCCGCTCCAACTTCGACTCCGACTCCACGGAATTCTCCGATACGGTGGACTTCCATCACTTCCTGGTGCAGCGCCGCGCCAACGACCTCCGCATCTTCCCATTCTCAGCGCTGAAGTTTGCCACGCGCGGGTTCAACCGCGCCCTCCTAGTTGGCGAGGGGGGGTTTGGGTCCGTGTACCGCGGCGTGGTGGAGGAAAAGGAGGTGGCGATCAAGCAGCTGAACCGCAACGGGCAGCAGGGGCACAAGGAGTGGATCAACGAGGTGAATTTGTTGGGAGTGGTGAAGCATCCTAATCTGGTGCGGTTGGTAGGGTACTGCGCTGAGGACGATGAAAGAGGGATCCAGAGGCTTCTGGTTTATGAGTTTATGCCGAATAAGAGCTTGGAGGAGCATCTCTTGGCACGAGTCCCTTCCACGGTTCTGCCTTGGGGGACCAGGTTGAGGATTGCGCAAGATGCGGCTCGCGGTTTGGCTTATCTTCACGAAGAAATGGATTTTCAGCTAATATTTCGGGATTTTAAGACGTCCAACATCCTGCTGGATGAAAACTTCAATGCAAAGCTTTCTGATTTTGGACTGGCTAGGCAAGGACCTTCAGAAGGGTCCGGCTATGTTTCAACAGCAGTTGTTGGCACCATAGGTTATGCTGCACCAGAGTATGTTCAGACTGGTAAGCTAACTGCTAAGAGTGATGTGTGGAGCTTTGGTGTAGTTCTTTACGAGCTTATCACTGGGAGGAGAGCTGTAGAGAGAAACCTACCTAAAAATGAACAGAAGCTTTTAGAGTGGGTTAGATCTTATGTTTCTGATCCTAGGAAGTTCCATCATATTGTAGACCCTCGACTTAAGGGGCAATACTGCATCAAATCAGCCCATAAACTTGCAATCCTGGCAAACAAATGCCTCACAAAACAGCCGAAGTCTCGCCCAAAAATGAGTGAGGTGGTTGAGTCTCTTGGAATCATTATTATTGAGACAGATACTCGGGATGAAGGGTTTCCCCAAGCTGCTGTAACCGCTAGAGAAGAAAAAGAAGAGAAGGTATCTGTAGAGGAAACTGAACCTGAACCAGCGAAACAAGGGAACAATTACCTGAAGAAGGTTTTTGAATTCAAAGACATGGTCAGCTTAAGAAACAAGTCTATTGGAAGGTTGGATTGGAAAAGTTGGGCGCCTGGGCTAGTAAGAAGCTGGTGA 1320 0.5038 MKCFYFSNAEDEDCVAAAPSSRGSTSRVSWARSLSLMDTRSRSNFDSDSTEFSDTVDFHHFLVQRRANDLRIFPFSALKFATRGFNRALLVGEGGFGSVYRGVVEEKEVAIKQLNRNGQQGHKEWINEVNLLGVVKHPNLVRLVGYCAEDDERGIQRLLVYEFMPNKSLEEHLLARVPSTVLPWGTRLRIAQDAARGLAYLHEEMDFQLIFRDFKTSNILLDENFNAKLSDFGLARQGPSEGSGYVSTAVVGTIGYAAPEYVQTGKLTAKSDVWSFGVVLYELITGRRAVERNLPKNEQKLLEWVRSYVSDPRKFHHIVDPRLKGQYCIKSAHKLAILANKCLTKQPKSRPKMSEVVESLGIIIIETDTRDEGFPQAAVTAREEKEEKVSVEETEPEPAKQGNNYLKKVFEFKDMVSLRNKSIGRLDWKSWAPGLVRSW 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01309 439 Pfam Protein kinase domain 90 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g01309 439 Gene3D Transferase(Phosphotransferase) domain 1 164 381 - -
Vian5g01309 439 ProSitePatterns Protein kinases ATP-binding region signature. 91 112 IPR017441 GO:0005524
Vian5g01309 439 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 164 372 - -
Vian5g01309 439 SUPERFAMILY Protein kinase-like (PK-like) 68 360 IPR011009 -
Vian5g01309 439 Gene3D Phosphorylase Kinase; domain 1 63 163 - -
Vian5g01309 439 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 59 163 - -
Vian5g01309 439 CDD STKc_IRAK 91 363 - -
Vian5g01309 439 PANTHER OS01G0588500 PROTEIN-RELATED 50 361 - -
Vian5g01309 439 ProSiteProfiles Protein kinase domain profile. 85 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g01309 439 MobiDBLite consensus disorder prediction 381 395 - -
Vian5g01309 439 MobiDBLite consensus disorder prediction 381 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01309 Vian-Chr5 35817336 35819705 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01309 71 368 Glycoside Hydrolase AT3G07070 49.834 4.22e-96 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vian5g01309 Pkinase 3.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01309 - - gmx:100305425 755.747