Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01308 ATGGGAGTTTGTTTAAGCACCAAAACTAAAACTGGGTTAAACTCAAAGAATGTGAGTGCCTATGCCAAAGATCTCAGCAATCCAAGTAGTAAAGTTATAAAAGAACTCAGTAGCACAATTAGTAAGGTCTCAGAGGTTTCTGTGCCTCAGACTCTTCAGAGTGAGGGTGAGATCTTGCATCCATCCAATCTAAAGAGCTTTAGTTTGACAGAACTTACAGCTGCCACAAGAAATTTCCGTAAGGACAGTGTATTAGGAGAGGGTGGTTTGGGATCAGTTTTTAAGGGTTGGATTGATGATCACTCACTTTCTGCAACCAAACCTGGCACTGGGATTGTTGTTGCTGTGAAAAGACTTAGCCAAGACAGTTTCCAATGTCACGAGGAGTGGTTGGCAAGGCACGGTATGACTCAGGAAGAAAGTCTCAAGGATGAAGTAAACTGTCTAGGGCAGCTTTCTCATCCTCATCTAGTGAAATTAATTGGATATTGCTTTGAAGATAGAGACCGTCTTCTGGTATATGAATTTATGCCTCGTGGTAGCTTGGAGAATCACTTGTTCATGAGAGGCTCATATTTTCAACCTCTTTCTTGGGGCCTGCGTTTGAAAGTCGCTCTTGGTGCTGCCAAAGGGCTTGCATTTCTTCACAGTGCTGAAACAAAAGTGATATATAAAGATTTCAAGACCTCAAATGTCTTGCTGGATTCACATTACAATGCAAAGCTTGCTGATTTGGGGCTCTCAATGGAAGCACCTACACGTGACAAAAGTCGTGTCTCCAGTAGAGTAATGGGAACCTATGGATATGCAGCTCCAGAATATCTAGCCACAGGTCATGTGAGTGCTAAGAGTGATGTCTTCAGTTTTGGAGTTGTTCTGCTAGAACTGTTATCTGGTAGGAGGGCTGTGGACAAGAACAGACCATCAGGGCAGCACAATTTGGTGGAATGGGCAAAGCCATACATGGCAAACAAGAGAAAGCTTCTGCGTGTGTTGGACAACCGTCTTGAAGGTCAATATGACATAGATGAAGCTTTTAAGGTAGCTACCCTCTGTCTGCGATGCCTTGCAACAGAATCCAAGTTGAGACCAAACATGGACGAAGTTGTCACAGATTTGGAGCACCTGCAGGTTCCGCATGTGCATCATAATCGTTCTGTGAATACCTCTCGTAGTCGTAGGAAAAGTGCTGATGATTTAACTAATGGTAGAAGCGCTAAAGCTTCACTTTCGCCTCTCTCACATGACATTGCAAATACACGTCCTTGA 1269 0.435 MGVCLSTKTKTGLNSKNVSAYAKDLSNPSSKVIKELSSTISKVSEVSVPQTLQSEGEILHPSNLKSFSLTELTAATRNFRKDSVLGEGGLGSVFKGWIDDHSLSATKPGTGIVVAVKRLSQDSFQCHEEWLARHGMTQEESLKDEVNCLGQLSHPHLVKLIGYCFEDRDRLLVYEFMPRGSLENHLFMRGSYFQPLSWGLRLKVALGAAKGLAFLHSAETKVIYKDFKTSNVLLDSHYNAKLADLGLSMEAPTRDKSRVSSRVMGTYGYAAPEYLATGHVSAKSDVFSFGVVLLELLSGRRAVDKNRPSGQHNLVEWAKPYMANKRKLLRVLDNRLEGQYDIDEAFKVATLCLRCLATESKLRPNMDEVVTDLEHLQVPHVHHNRSVNTSRSRRKSADDLTNGRSAKASLSPLSHDIANTRP 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01308 422 Gene3D Phosphorylase Kinase; domain 1 48 176 - -
Vian5g01308 422 FunFam Serine/threonine-protein kinase BIK1 46 176 - -
Vian5g01308 422 Gene3D Transferase(Phosphotransferase) domain 1 177 399 - -
Vian5g01308 422 ProSiteProfiles Protein kinase domain profile. 79 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g01308 422 PANTHER OS01G0588500 PROTEIN-RELATED 39 377 - -
Vian5g01308 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Vian5g01308 422 MobiDBLite consensus disorder prediction 402 422 - -
Vian5g01308 422 Pfam Protein tyrosine and serine/threonine kinase 82 373 IPR001245 GO:0004672|GO:0006468
Vian5g01308 422 MobiDBLite consensus disorder prediction 380 422 - -
Vian5g01308 422 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 177 387 - -
Vian5g01308 422 SUPERFAMILY Protein kinase-like (PK-like) 63 382 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01308 Vian-Chr5 35810461 35812802 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01308 65 380 Glycoside Hydrolase AT3G07070 45.427 3.93e-90 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vian5g01308 PK_Tyr_Ser-Thr 8e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01308 - - vun:114169806 738.028