Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01301 ATGAATCTTCTACAATTTAGAAAAGAAGAGGAAGAAGAGCGTCATCACGCGTTTTTCTCTCTATCGCTTAAAACTGCTGTGTCTGCGAAATTCGTGTCGTTGACGAGGGACTATGAGCAGCGACTTCGATCTCCGGCAATCGGCGAGGGTTTTCAACTAAACGGCGCCGTAGAGCGGGATCTGCGATTACAGGCCATGGAGGGGGAAAACGCGAGCAAGGTGATTGAGTTGGTGAACGAGATAGCGAGTATCTCCGATTACAGGCCTCCGGTGAAGAAGCAGTACTGCAACTTGGCGAGGAGGTTGAAGCTGTTGATCCCGATGTTCGAGGAGATTAGGGACATGAAAGACCAGATCCCCGAGGACACTTCCAAAGCCGTCCTCGCCTTCAAGGAAGCTCTCGAATCCGCCAGGGAACTTCTCAGATTTGGAAGCGAAGGCAGCAAGCTTTTCTTGGTCCTTGAGCGGGATGGCATTATGAATAAATTCAACGACGTGACAGCTCGGCTGGAACAATCGTTGGGTGGTATTTCGTATGATAAACTTGATATCTCAGATGAAGTTAAAGAGCAGGTTGAGCTGGTTCTTGCCCAGTTCAGAAGAGCTAAAGGGAGGGTTGACGAACCAGATGTTAGGTTGTATGAGGATATGTTGTTCCTCTACGACAACAGCAGTGATGCAGCTACAGATCCATCTGTTCTAAGTCGACTGGCTGAAAAATTGCAACTGATGGGAATAGCTGATCTTACGCAAGAATCGCTAGCTTTGCATGAGATGGTGATATCAAGTGGTGGGGATCCTGGGGCACGCATCGAGAAAATAGCAATGTTACTGAAGAAGATAAAGGATTACGTGCAAACAGAAAATCTAGTTAAGGATGATAATTTAGGAGGAAAAGGCATTTTTGCAAAAGTCTATGGAGTCAGTACAAATGAAAAGAGTCATCAGGCCCCTGTTATTCCTGATGATTTTCGATGTCCCATTTCCCTGGAATTAATGAAGGATCCTGTGATTGTTTCAACCGGACAGACTTACGAGCGTTCTTGTATTGAGAAATGGTTGCAAGCAGGGCATGGGACATGCCCCAAGACACAGCAGACTCTCACTAGCACCGTTCTCACACCCAACTATGTCCTACGAAGTCTCATAGCACAGTGGTGTGAAGCCAATGGCATAGAGCCACCAAAACGACCCAGCAGCAGTTCACAACCTAGTAAATCAGCATCAGCCTACTCACCAGCTGAGCGAAGTAAGATCGACGGTCTTCTCCAAAAGCTCACATCTGGCAGTCCTGAAGACCAGAGATCAGCTGCTGGTGAGATCCGCCTTCTTGCAAAGCGTAATGCAGATAACCGTGTTGCCATTGCTGAAGCTGGTGCAATACCTCTCCTCGTTGGTCTTTTGTCTGTGCCTGACTCCCGCACTCAAGAACATGCTGTGACAGCGCTTCTGAATCTTTCCATATATGAAAATAACAAAGGAAGCATTGTCTCTTCAGGGGCAGTTCCAGGTATAGTTCACGTGCTGAAGAAGGGAAGCATGGAAGCGCGGGAAAATGCTGCAGCAACACTTTTCAGCCTTTCAGTTATAGATGAAAACAAGGTTACAATTGGATCTTCAGGAGCCATACCTCCACTAGTGACACTGCTGAGTGAGGGTACCCAGAGGGGTAAGAAAGATGCTGCGACAGCACTCTTCAATTTGTGCATTTACCAGGGCAACAAGGGGAAGGCAGTGCGGGCTGGCGTTATTCCCACACTGATGCGACTGCTGACTGAACCTAGTGGGGGAATGGTAGATGAAGCATTAGCTATTTTGGCGATACTGGCTAGCCATCCTGATGGGAAGGCTACGATTAGAGCTTCAGAGGCAGTGCCAGTTTTAGTAGAGTTCATTGGGAATGGTTCCCCAAGGAACAAAGAGAATGCAGCTGCTGTTTTAGTTCATCTCTGTTCTGGAGATCAACAATATCTGGTACAGGCCCAAGAGCTGGGGGTGATGGGTCCACTGTTGGAGTTGGCTCAAAATGGTACAGACAGAGGCAAAAGAAAGGCTTTACAGTTACTAGAGCGTATGGGAAGGTTGCTGGAGCAACAGCAGGAAGTTCCAACACAAACTGAAACTCAAGCCCAGAACGAGGAAACTCAACCTCCTTTGATTACTAACCCCGATGATTCCTAA 2181 0.4755 MNLLQFRKEEEEERHHAFFSLSLKTAVSAKFVSLTRDYEQRLRSPAIGEGFQLNGAVERDLRLQAMEGENASKVIELVNEIASISDYRPPVKKQYCNLARRLKLLIPMFEEIRDMKDQIPEDTSKAVLAFKEALESARELLRFGSEGSKLFLVLERDGIMNKFNDVTARLEQSLGGISYDKLDISDEVKEQVELVLAQFRRAKGRVDEPDVRLYEDMLFLYDNSSDAATDPSVLSRLAEKLQLMGIADLTQESLALHEMVISSGGDPGARIEKIAMLLKKIKDYVQTENLVKDDNLGGKGIFAKVYGVSTNEKSHQAPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLQAGHGTCPKTQQTLTSTVLTPNYVLRSLIAQWCEANGIEPPKRPSSSSQPSKSASAYSPAERSKIDGLLQKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQEHAVTALLNLSIYENNKGSIVSSGAVPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGSSGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTEPSGGMVDEALAILAILASHPDGKATIRASEAVPVLVEFIGNGSPRNKENAAAVLVHLCSGDQQYLVQAQELGVMGPLLELAQNGTDRGKRKALQLLERMGRLLEQQQEVPTQTETQAQNEETQPPLITNPDDS 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01301 726 SMART Ubox_2 323 386 IPR003613 GO:0004842|GO:0016567
Vian5g01301 726 MobiDBLite consensus disorder prediction 699 726 - -
Vian5g01301 726 SUPERFAMILY ARM repeat 419 692 IPR016024 -
Vian5g01301 726 Gene3D - 66 179 IPR036537 GO:0007166
Vian5g01301 726 SMART arm_5 489 529 IPR000225 GO:0005515
Vian5g01301 726 SMART arm_5 654 694 IPR000225 GO:0005515
Vian5g01301 726 SMART arm_5 612 652 IPR000225 GO:0005515
Vian5g01301 726 SMART arm_5 530 570 IPR000225 GO:0005515
Vian5g01301 726 SMART arm_5 571 611 IPR000225 GO:0005515
Vian5g01301 726 SMART arm_5 448 488 IPR000225 GO:0005515
Vian5g01301 726 FunFam RING-type E3 ubiquitin transferase 596 713 - -
Vian5g01301 726 MobiDBLite consensus disorder prediction 393 415 - -
Vian5g01301 726 FunFam RING-type E3 ubiquitin transferase 67 180 - -
Vian5g01301 726 FunFam RING-type E3 ubiquitin transferase 496 595 - -
Vian5g01301 726 SUPERFAMILY RING/U-box 309 396 - -
Vian5g01301 726 FunFam RING-type E3 ubiquitin transferase 401 495 - -
Vian5g01301 726 Gene3D - 400 718 IPR011989 -
Vian5g01301 726 ProSiteProfiles U-box domain profile. 319 393 IPR003613 GO:0004842|GO:0016567
Vian5g01301 726 PANTHER U BOX DOMAIN-CONTAINING 90 694 - -
Vian5g01301 726 FunFam RING-type E3 ubiquitin transferase 320 393 - -
Vian5g01301 726 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 320 393 IPR013083 -
Vian5g01301 726 Pfam Neurochondrin 583 704 IPR008709 -
Vian5g01301 726 CDD MLKL_NTD 72 200 - -
Vian5g01301 726 Pfam Armadillo/beta-catenin-like repeat 531 569 IPR000225 GO:0005515
Vian5g01301 726 Pfam Armadillo/beta-catenin-like repeat 448 487 IPR000225 GO:0005515
Vian5g01301 726 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 582 624 IPR000225 GO:0005515
Vian5g01301 726 CDD RING-Ubox_PUB 321 373 IPR045210 -
Vian5g01301 726 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 459 501 IPR000225 GO:0005515
Vian5g01301 726 MobiDBLite consensus disorder prediction 395 412 - -
Vian5g01301 726 Pfam U-box domain 320 390 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01301 Vian-Chr5 35734458 35739354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01301 66 726 U-box Gene Family AT3G46510 69.715 0.0 909
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01301 - - gmx:100812160 1161.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01301 5 35734458 35739354 Vian5g01301 5 35734458 35739354 ECH