LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian5g01297	ATGGCGAATACACTCATTTCGTCTCCTTCGTTCCTCGGCACGCCTCTTCCCTCGCTCCAACGCCACCACCGCACCACTACCAGGCTTGTCGCCACCAAGGTCCACGTCAGCCTCCACCAAATCCCCCCTCTCCACTCCATAAGCCACTCCATCGACTTCGTCGGTATCGCCACCAGAGCTGAAGGCCTTCTTTACACTCTCGCTGACGCTGCGGTTGCGGCGGACCCGGCTGCTCCCGCCACTGATGCTGCCGTGCAGAAGAACGGAGGCTGGTTCGGCTTCATCTCCGAAGCCATGGAGGCTATTCTCAAGGTGTTGAAGGATGGCCTTTCTGCTGTGCATGTGCCTTATGCATATGGATTTGCTATCATATTACTCACTGTTATAGTTAAGGCTGCAACACTTCCCTTGACAAAGCAACAGGTTGAATCTACATTGGCTATGCAAAATCTTCAACCAAAAATTAAGGCTATTCAAGAAAGATATGCTGGCAATCAGGAAAGAATACAACTTGAGACATCAAGGCTATATCGGCAGGCTGGGGTTAATCCATTGGCAGGTTGTTTACCTACTTTGGCCACAATTCCAGTCTGGATTGGTCTCTACCAAGCATTGTCAAATGTGGCAAACGAGGGACTATTGACTGAGGGTTTCTTTTGGATACCCTCTTTGGCTGGTCCTACTACCATTGCTGCTAGGCAAAGTGGAGCTGGAATTTCTTGGCTTTTTCCATTTGTGGATGGGCATCCACCTTTGGGTTGGCAAGATACTGCAGCATATCTTGCTTTACCCATTCTTCTTGTCATTTCTCAATTTGTTTCAATGGAAATCATGAAACCACCTGAGACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTCATGATCGGCTACTTCTCACTATCTGTCCCATCAGGATTAACAATTTACTGGTTTATAAACAATGTCCTGAGCACAGCTCAACAAGTATGGTTGCGCAAATTGGGGGGTGCAAAGCCTGTTGTGAATGAAAATGCCAGTGGGATTATTACTGCAGGACGAGCTAAAAGATCTGACTTGCAGCCGGCAAAAGGCGGTGAAAGGTTTAAGCAGTTAAAAGAAGAGGAAAAGAAGAAAAAGTTAAGCAAGGCACTGCCAGTGGAAGATGTTCAGCCTCTGGCATCTGTTTCTGCTTCTGATGATGGCTCGGACATAGATAGTGACAGCAAGGAACAGGAAGTTGAAGAAGGAGCCTATGCTTCTAAAGTTGGTGAAGAGGTTCAAATTAATTCTAGGGAAAGAAGAAGCAAGCGTTCGAAGCGGAAGCGTGCTGTATAA	1332	0.467	MANTLISSPSFLGTPLPSLQRHHRTTTRLVATKVHVSLHQIPPLHSISHSIDFVGIATRAEGLLYTLADAAVAADPAAPATDAAVQKNGGWFGFISEAMEAILKVLKDGLSAVHVPYAYGFAIILLTVIVKAATLPLTKQQVESTLAMQNLQPKIKAIQERYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLAGPTTIAARQSGAGISWLFPFVDGHPPLGWQDTAAYLALPILLVISQFVSMEIMKPPETDPSQKNQLLILKFLPLMIGYFSLSVPSGLTIYWFINNVLSTAQQVWLRKLGGAKPVVNENASGIITAGRAKRSDLQPAKGGERFKQLKEEEKKKKLSKALPVEDVQPLASVSASDDGSDIDSDSKEQEVEEGAYASKVGEEVQINSRERRSKRSKRKRAV	443

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian5g01297	443	CDD	5TM_YidC_Alb3	120	332	IPR047196	-
	Vian5g01297	443	Pfam	60Kd inner membrane protein	119	332	IPR028055	-
	Vian5g01297	443	NCBIfam	membrane protein insertase YidC	119	331	IPR028055	-
	Vian5g01297	443	MobiDBLite	consensus disorder prediction	389	443	-	-
	Vian5g01297	443	PANTHER	OXA1	68	377	IPR001708	GO:0016020\|GO:0032977

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian5g01297	Vian-Chr5	35689471	35694991	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian5g01297	21	388	Chloroplast and Mitochondria Gene Families	AT2G28800	68.108	5.32e-179	505

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian5g01297	K03217		-	gmx:100813782	716.842

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vian5g01297	5	35689471	35694991	Vian5g01297	5	35689471	35694991	ECH