Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vian5g01287 | ATGGAAGCACCGGAGAAGAAAGAAAGCAACCAGAAAAAGGAATTTCATGGAGCACCACTTATGAACGCTGAAGAGCATGACGGTTTGCTTGATTTTGAAGAGATATTACGTGAACGCGATACCAGATCTGCGAGTGAAAGGGTTTTGCCATTGCCTGCATCTGCACGAGCTGAACCTGGGAAAAGTAGAAGCTTCTTGATATCTGTTCCAAAACCCAAACCTGAGTCTGCAAACATGTCTGCGGCTCTGGATTTGACGTTCGATGACATCATCAAGAATAACAAAAAATCTGGATCCGGAAACTTCCGTGGCCAGAACCGATCATCCGGATCCGGACACGGACCTTCACGCCGCTTCCCTAACCGTTCTGCCAACCGCGCCGCTCCATATGCCACCGCCAAGGTAGATCAGCCCGTGGCTGCGGCGGGGTACCCTTCTCAAGGTGGTTCTGCGTCTTCCATGGAAACTGGGACCAAACTTTACATTTCTAACTTGGATTATGGCGTTTCCAATGATGATATTAAGGAATTGTTTTCTGAAGTTGGTGACCTGAAACGGCATGGGGTTCACTACGACAGGAGTGGAAGATCGGAGGGTACTGCAGAAGTAGTATTTTCACGACGAGCTGATGCTGTAGCTGCTGTAAAGAGATACAACAATGTTCAATTAGATGGGAAACCAATGAAGATAGAGATTGTGGGAAACATTTCTATGCCTGGTGTTCCCGCTGCAAACAGAGCTATTGGAAATTTGAATGGAGGTCCTCGAAGTGGACAAGGAAGAAGTGGGGCATTTAGAAAGCCAGGAGGAAGAGGGCAAGGCATTCAAAGGGATGGAGGTCAAGGAAGAGGTCGTGGTGGAGGAAGACGTGACGAAAAGTTATCTGCAGATGATCTGGATGCTGATCTGGAGAAATATCATGCAGAGGCAATCCAATTGAACTAA | 945 | 0.4741 | MEAPEKKESNQKKEFHGAPLMNAEEHDGLLDFEEILRERDTRSASERVLPLPASARAEPGKSRSFLISVPKPKPESANMSAALDLTFDDIIKNNKKSGSGNFRGQNRSSGSGHGPSRRFPNRSANRAAPYATAKVDQPVAAAGYPSQGGSASSMETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYDRSGRSEGTAEVVFSRRADAVAAVKRYNNVQLDGKPMKIEIVGNISMPGVPAANRAIGNLNGGPRSGQGRSGAFRKPGGRGQGIQRDGGQGRGRGGGRRDEKLSADDLDADLEKYHAEAIQLN | 314 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vian5g01287 | 314 | Gene3D | - | 145 | 296 | IPR012677 | - | |
Vian5g01287 | 314 | SMART | rrm1_1 | 159 | 231 | IPR000504 | GO:0003723 | |
Vian5g01287 | 314 | MobiDBLite | consensus disorder prediction | 283 | 300 | - | - | |
Vian5g01287 | 314 | PANTHER | RNA AND EXPORT FACTOR BINDING PROTEIN | 83 | 309 | - | - | |
Vian5g01287 | 314 | Coils | Coil | 296 | 314 | - | - | |
Vian5g01287 | 314 | MobiDBLite | consensus disorder prediction | 40 | 77 | - | - | |
Vian5g01287 | 314 | FunFam | THO complex subunit 4 | 151 | 296 | - | - | |
Vian5g01287 | 314 | CDD | RRM_THOC4 | 158 | 232 | - | - | |
Vian5g01287 | 314 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 160 | 228 | IPR000504 | GO:0003723 | |
Vian5g01287 | 314 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Vian5g01287 | 314 | SMART | FoP_duplication_2 | 234 | 314 | IPR025715 | - | |
Vian5g01287 | 314 | Pfam | C-terminal duplication domain of Friend of PRMT1 | 254 | 308 | IPR025715 | - | |
Vian5g01287 | 314 | SUPERFAMILY | RNA-binding domain, RBD | 103 | 232 | IPR035979 | GO:0003676 | |
Vian5g01287 | 314 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 158 | 235 | IPR000504 | GO:0003723 | |
Vian5g01287 | 314 | MobiDBLite | consensus disorder prediction | 95 | 118 | - | - | |
Vian5g01287 | 314 | MobiDBLite | consensus disorder prediction | 247 | 300 | - | - | |
Vian5g01287 | 314 | MobiDBLite | consensus disorder prediction | 95 | 123 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vian5g01287 | Vian-Chr5 | 35626642 | 35631069 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vian5g01287 | 157 | 232 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 34.211 | 2.76e-08 | 53.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vian5g01287 | K12881 | - | gmx:100775827 | 342.043 |