Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01287 ATGGAAGCACCGGAGAAGAAAGAAAGCAACCAGAAAAAGGAATTTCATGGAGCACCACTTATGAACGCTGAAGAGCATGACGGTTTGCTTGATTTTGAAGAGATATTACGTGAACGCGATACCAGATCTGCGAGTGAAAGGGTTTTGCCATTGCCTGCATCTGCACGAGCTGAACCTGGGAAAAGTAGAAGCTTCTTGATATCTGTTCCAAAACCCAAACCTGAGTCTGCAAACATGTCTGCGGCTCTGGATTTGACGTTCGATGACATCATCAAGAATAACAAAAAATCTGGATCCGGAAACTTCCGTGGCCAGAACCGATCATCCGGATCCGGACACGGACCTTCACGCCGCTTCCCTAACCGTTCTGCCAACCGCGCCGCTCCATATGCCACCGCCAAGGTAGATCAGCCCGTGGCTGCGGCGGGGTACCCTTCTCAAGGTGGTTCTGCGTCTTCCATGGAAACTGGGACCAAACTTTACATTTCTAACTTGGATTATGGCGTTTCCAATGATGATATTAAGGAATTGTTTTCTGAAGTTGGTGACCTGAAACGGCATGGGGTTCACTACGACAGGAGTGGAAGATCGGAGGGTACTGCAGAAGTAGTATTTTCACGACGAGCTGATGCTGTAGCTGCTGTAAAGAGATACAACAATGTTCAATTAGATGGGAAACCAATGAAGATAGAGATTGTGGGAAACATTTCTATGCCTGGTGTTCCCGCTGCAAACAGAGCTATTGGAAATTTGAATGGAGGTCCTCGAAGTGGACAAGGAAGAAGTGGGGCATTTAGAAAGCCAGGAGGAAGAGGGCAAGGCATTCAAAGGGATGGAGGTCAAGGAAGAGGTCGTGGTGGAGGAAGACGTGACGAAAAGTTATCTGCAGATGATCTGGATGCTGATCTGGAGAAATATCATGCAGAGGCAATCCAATTGAACTAA 945 0.4741 MEAPEKKESNQKKEFHGAPLMNAEEHDGLLDFEEILRERDTRSASERVLPLPASARAEPGKSRSFLISVPKPKPESANMSAALDLTFDDIIKNNKKSGSGNFRGQNRSSGSGHGPSRRFPNRSANRAAPYATAKVDQPVAAAGYPSQGGSASSMETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYDRSGRSEGTAEVVFSRRADAVAAVKRYNNVQLDGKPMKIEIVGNISMPGVPAANRAIGNLNGGPRSGQGRSGAFRKPGGRGQGIQRDGGQGRGRGGGRRDEKLSADDLDADLEKYHAEAIQLN 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01287 314 Gene3D - 145 296 IPR012677 -
Vian5g01287 314 SMART rrm1_1 159 231 IPR000504 GO:0003723
Vian5g01287 314 MobiDBLite consensus disorder prediction 283 300 - -
Vian5g01287 314 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 83 309 - -
Vian5g01287 314 Coils Coil 296 314 - -
Vian5g01287 314 MobiDBLite consensus disorder prediction 40 77 - -
Vian5g01287 314 FunFam THO complex subunit 4 151 296 - -
Vian5g01287 314 CDD RRM_THOC4 158 232 - -
Vian5g01287 314 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 228 IPR000504 GO:0003723
Vian5g01287 314 MobiDBLite consensus disorder prediction 1 26 - -
Vian5g01287 314 SMART FoP_duplication_2 234 314 IPR025715 -
Vian5g01287 314 Pfam C-terminal duplication domain of Friend of PRMT1 254 308 IPR025715 -
Vian5g01287 314 SUPERFAMILY RNA-binding domain, RBD 103 232 IPR035979 GO:0003676
Vian5g01287 314 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 235 IPR000504 GO:0003723
Vian5g01287 314 MobiDBLite consensus disorder prediction 95 118 - -
Vian5g01287 314 MobiDBLite consensus disorder prediction 247 300 - -
Vian5g01287 314 MobiDBLite consensus disorder prediction 95 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01287 Vian-Chr5 35626642 35631069 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01287 157 232 Eukaryotic Initiation Factors Gene Family AT2G23350 34.211 2.76e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01287 K12881 - gmx:100775827 342.043