Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01282 ATGGCTTCAAACCTTTCGAGTTCGATGGTGACGCCAAGATTGCACCAATGCTCAATTTGTGGACTTGTGTTTGGTCTTGGACAAGCTTTGGGAGGACATATGAGAAAGCATAGAGTTTCTTCAAATGATGCCTTGTCAACTATTCATGACCGAGATTTGCCAGAATCTAATGTCATTAAAAAGCTTCGTTTGTGGTTGGACTTGAACTTGACACCGTATGAGAATTATCTTACCCTCAATTCAATGACACCTGTTTTACATTTGTTCTTGTGA 273 0.3993 MASNLSSSMVTPRLHQCSICGLVFGLGQALGGHMRKHRVSSNDALSTIHDRDLPESNVIKKLRLWLDLNLTPYENYLTLNSMTPVLHLFL 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01282 90 Pfam C2H2-type zinc finger 15 38 - -
Vian5g01282 90 ProSitePatterns Zinc finger C2H2 type domain signature. 17 37 IPR013087 -
Vian5g01282 90 PANTHER ZINC FINGER PROTEIN ZAT5 11 72 - -
Vian5g01282 90 SUPERFAMILY beta-beta-alpha zinc fingers 12 38 IPR036236 -
Vian5g01282 90 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 37 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01282 Vian-Chr5 35578744 35579016 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01282 14 79 C2H2 Transcription Factor Family AT3G53600 48.571 9.08e-14 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01282 - - gmx:112998408 117.472