Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01280 ATGGTTCAAGAAGAAATGAGAAGGGGTCCGTGGACAGAAGAGGAGGACTTGAAACTGGTGTATTTTGTAAACATGTTTGGAGATCGTAGGTGGGACTTTATAGCAAAGGTATCAGGTTTGAATAGAACAGGTAAGAGTTGCAGGTTACGGTGGGTTAATTACCTCCACCCTGATCTCAAACGAGGGAAGCTGACATCCCAAGAAGAACACCTCGTCATGGAGCTTCATTCCAAATGGGGAAATAGATGGTCAAGAATTGCTCGGAAGCTACCAGGCCGTACTGACAACGAGATTAAGAATTTCTGGAGGACTTTCATGAGGAAAAAGAAGGCTCTAGAGAAAAAACGAGCATCACCATCCTCCTCCTCGTCATCATCTTCACTGTCCTCAATCAACCATGCTGTGGATTCACATGCTTCCAAAGAGGTTGGAGAGGAGAGCTTTTACGACACAGGTGGATATGGATATGATGATGTAACAGGGTTGATCAGTGCTGGAGAAGAGTTCTCTTTGGATGATATATGGAAAGATATTGTTTTGTCAGAAGATGATACTATTCAGCAACAACCTCTGTACGAATTGCAGAGTCAAGAGGGTTGCAACTTCTCTTCTCCACCTGCAATGATTTATTCTCCATCATCATCATGGGAGTACAATTCTTCTCACCCCTTATGGGTGATGGATGAAGAAGAAAGTAGCAAGATGTTGTTTCCTGCATCAAGTGACCAATACTATTATTCCTGCTACGAACAGGGGAATGCATTTCTAACTGGCTAA 777 0.4311 MVQEEMRRGPWTEEEDLKLVYFVNMFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPDLKRGKLTSQEEHLVMELHSKWGNRWSRIARKLPGRTDNEIKNFWRTFMRKKKALEKKRASPSSSSSSSSLSSINHAVDSHASKEVGEESFYDTGGYGYDDVTGLISAGEEFSLDDIWKDIVLSEDDTIQQQPLYELQSQEGCNFSSPPAMIYSPSSSWEYNSSHPLWVMDEEESSKMLFPASSDQYYYSCYEQGNAFLTG 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01280 258 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Vian5g01280 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Vian5g01280 258 Pfam Myb-like DNA-binding domain 61 104 IPR001005 -
Vian5g01280 258 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Vian5g01280 258 CDD SANT 65 106 IPR001005 -
Vian5g01280 258 FunFam Myb transcription factor 8 60 - -
Vian5g01280 258 SMART sant 60 108 IPR001005 -
Vian5g01280 258 SMART sant 7 57 IPR001005 -
Vian5g01280 258 Gene3D - 64 107 - -
Vian5g01280 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Vian5g01280 258 CDD SANT 10 55 IPR001005 -
Vian5g01280 258 Gene3D - 8 60 - -
Vian5g01280 258 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Vian5g01280 258 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 2 126 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vian5g01280 258 FunFam MYB-related transcription factor 64 110 - -
Vian5g01280 258 SUPERFAMILY Homeodomain-like 6 102 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01280 Vian-Chr5 35557611 35558651 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01280 1 256 MYB Transcription Factor Family AT5G59780 50.973 1.92e-73 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian5g01280 Myb_DNA-binding 5.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01280 K09422 - gmx:100776886 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01280 5 35557611 35558651 Vian11g00414 11 3887738 3888469 PCT