Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01275 ATGTCTTCTGTTTCTGCTGAAAGCAGTAACCCTGCTCCATGGAAGCTGGAAGAGATTGTTTCAATTATTATAGTGTGCATTATCTTTCTTACACTGAGTGATTGCTTCGGCGTATTCAAGCGTCTGTTGCGTGGAATTTTCCGAAGCAGAAACCAGGTTCCAAGGAGGTTTCTAGATGTGACCGTTCTCGACGATGATCCTTCCATGCAGGTTCAAAGCCGAGGATTGGAGTTCTGTGTGGTGCAGTCTCTTCCAACGATTGAGTTCAAGAGAAACGAGGCAGAACAAGACAAGGGAAGTAATGTGGAATGTGTCATTTGTCTTGGAGAGTTTGAGGAAGGGGAGAGACTGAAACATCTTCCAGAATGCAGCCATAGCTTCCATGTTTCATGCATTGACAAGTGGTTTCAGTCTCATTCAAATTGTCCTCTGTGTAGAGCATTTGTGCATCATCCCATGCTGCACTGTTCCGTAGATGCTTCTCACACATTGCTACAGCCTTTGAGGAGGGAAGACTTTGAAAGGGAAAATCTGCCTAGCACACAACAGTTCCTTCCCCCTTGA 564 0.4521 MSSVSAESSNPAPWKLEEIVSIIIVCIIFLTLSDCFGVFKRLLRGIFRSRNQVPRRFLDVTVLDDDPSMQVQSRGLEFCVVQSLPTIEFKRNEAEQDKGSNVECVICLGEFEEGERLKHLPECSHSFHVSCIDKWFQSHSNCPLCRAFVHHPMLHCSVDASHTLLQPLRREDFERENLPSTQQFLPP 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01275 187 Pfam Ring finger domain 103 146 IPR001841 -
Vian5g01275 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 151 IPR013083 -
Vian5g01275 187 PANTHER RING-H2 FINGER PROTEIN ATL16 22 160 IPR044600 GO:0016567|GO:0016740
Vian5g01275 187 FunFam E3 ubiquitin-protein ligase ATL6 64 152 - -
Vian5g01275 187 SMART ring_2 104 145 IPR001841 -
Vian5g01275 187 CDD RING-H2_EL5-like 103 146 - -
Vian5g01275 187 SUPERFAMILY RING/U-box 80 153 - -
Vian5g01275 187 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01275 Vian-Chr5 35529436 35529999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01275 66 149 Rapid Response to Elicitors AT3G16720 51.136 2.54e-22 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01275 - - gmx:121172630 246.899