Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01274 ATGGCCCATTTTCAAAAATGGATAAGCACATTTTGGTCATTTTGCATTTCGTATATAAACTTCATAAACCAAAACGTAAACCCTAGAGCCGGGTTTGTTCCTCTGCACAGGAATTCGGAATATTTGACTGGTAGAGTTTTTTTTTCAATGGCTCCCGCTAAAGTTGATAGTTCTAAGAAGGGTGATCCAAAGGCACAGGCCTTGAAAACTGCTAAGGCAGTTAAGTCTGGACCTACCTTTAAGAAGAAGGCGAAGAAGATCCGAACTTCTGTGACTTTCCACAGGCCGAAGACCTTGAAGAAGGATAGGAATCCTAAATACCCTCGCATTAGTGCGCCACCAAGGAACAAGCTTGATCATTATCAGATCCTGAAGTTCCCTCTTACTACTGAGTCTGCTATGAAGAAGATCGAGGACAACAACACTTTGGTTTTCATCGTCGACCTACGTGCGGACAAGAAGAAGATCAAGGATGCAGTGAAGAAAATGTATGACATCCAAGCGAAGAAAGTTAACACCTTGATCAGGCCTGATGGCACCAAGAAGGCTTATGTCAGGTTGACCCCTGATTACGATGCATTGGATGTGGCAAACAAGATCGGCATCATCTAA 612 0.4314 MAHFQKWISTFWSFCISYINFINQNVNPRAGFVPLHRNSEYLTGRVFFSMAPAKVDSSKKGDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01274 203 PANTHER 60S RIBOSOMAL PROTEIN L23A 56 203 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vian5g01274 203 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 120 196 IPR012678 GO:0003735|GO:0005840|GO:0006412
Vian5g01274 203 NCBIfam 50S ribosomal protein L23 127 203 IPR019985 GO:0003735|GO:0005840|GO:0006412
Vian5g01274 203 FunFam 60S ribosomal protein L23a 83 203 - -
Vian5g01274 203 Pfam Ribosomal protein L23, N-terminal domain 64 113 IPR005633 -
Vian5g01274 203 Pfam Ribosomal protein L23 123 185 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vian5g01274 203 Hamap 50S ribosomal protein L23 [rplW]. 123 203 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vian5g01274 203 Gene3D - 84 203 IPR012677 -
Vian5g01274 203 ProSitePatterns Ribosomal protein L23 signature. 181 196 IPR001014 GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01274 Vian-Chr5 35526912 35528326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01274 50 203 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 87.662 2.35e-69 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01274 K02893 - jre:109021970 295.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00418 11 3912426 3913516 Vian5g01274 5 35526912 35528326 PCT