Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01244 ATGAACAATAATGTTGGGAAAGGGAAAAGAGGTTTGGCAGAACGTAATCATATGATTTTTGACAAAAAGAGCCTCAATTTTGGAGTAGCCAATGGAGGGGTAAGTTCTGGATCATCAACAGAAGATGACCCAAGATTTAATAAGCTGAATCAAGATGGAAACAATGGATTGAAGGGTCTGATTCAAATCAATGGGAGCTTGCAGGTTTCACAGCAACCACCTCAAGGGCCAGTCATTTGCTGGGATAGATTTCTCCCTGTGAGATCAATAAAAGTTTTGCTGGTGGAAGATGATGATTCAACACGCCACGTTGTGCGTGCTCTTTTTTGCAATTGTAGTTACGAAGTTACTGCTGTTTCCAATGGTCTTCAAGCCTGGAAAGTCCTAGAAAATCCAGAAAATTGCATCGGTCTGGTCTTAACAGAGGTAGCTATGCCAATTTTGTCTGGAATAGGTCTTTTGTGCAAGATCATGAACCACAAAACACTGAAGAATATCCCTGTGATTATGATGTCGTCTCATGATTCTATGGGTATCATCTTTAAGTGTTTGTCAAAAGGTGCTGTTGACTTTTTAGTGAAACCTATTCGGAGGAATGAACTTAAAAATCTTTGGCAGCATGTTTGGAGAAGATGCCACAGTTCTAGCGGCAGTGGGAGTGAAAGTGCGACCAACTTCAGAAAATCTACGAAGTCAAGAAGTAATGATGCTTCTGAAAACAATAGTGACAGCAATGAGGAGAATGACTATGGAAGCAAAGGCTTGAGCATTCGAGATGGAAGTGACAATGGAAGTGGCACTCAGAGTTCGTGGACTAAATGTCTGGCTCAAGTTGGCAGTCCTCATCCACTTTCACCACATAAACAATTGGTTGATCCCCCTGATAGCACTTGTGCCCAAGTGATGCAAACGAAGACTGAAAAAGCTAGTTGTAGATGGGTGCATGCAACAGAAAAGGAGTGCCTTGAACTTATTGATCATCTTGATGATGTTGCAATGGGCAAGGACTTGGCTGTTGGAATATCTTTGAGTATGCAACTAGAGCATCGACTTGAGGGACTGTCTAGCAATCCAATGGGTAAAGGGGCAAATAAAATGTCTGATGATGATGATATGCAGATAGTTAAAGGACAGAGTAATGCCTGTGAAAAAGGAGAAATGGAATGCAATGGTGGTAAAACCAGGACACAGGAAAACCAGACTATGAATGTTATTGATGTTACTGATAGCAACAGTCCACAGGCTGAAAGCAGAGACTTGAACACTCCAAATGGGTTCTCTGGTTTCTCACTAACGAAAGAAAACTCTTGCCCCAAAGAGCATCCATCCCTGGAACTAACTTTGAAAAGGCTGGGAGAAGTAAGAGATCCTAAAAATGTCACGGGTGAAGAATGCAATGTTTTGAGACATTCAGACCAATCAGCATTCTCAAAATATAATACTGCTTCTTCTGCTAACCAGGCTCGAACAGGAAATGTAGGAAGCTGTTCTCCACTGGCCAATGGCTCAGCTGCACCTAATGCAGAGGTAATAAACAACTTTCCATCTCACTCAAATGTCACTCCTCCAAACCAGCAATCTAATGGGAGCAACAACATCAATGACATGGCCTCCATTAATACATATCTTGGCACCAAACCTTGTACTTTTGACAAGATGCCAGAGTCTGTAAGAGGTTTGGGCTCATTTAATTCCTCTGAACTCCGAACAATACGGAACAATAGTATCTCTTCGTCTCAGAAGAAAACCTATGCCCGGGAAGAATATATGGAAATTGTTAGAGGACAAGTGGGAAGCTCTGAACATGAATTCAAAGCCGAGCACACTCATTATGAGCTTCACCATTATAATCACATTTCCCGTAAAGCGGCTGTAGATCTCCAATCAGATCATGATCTCTTACTCAAAAGATCAACCAACACTGCTCAGCAATGTGTATCATCAAATGCGTTTGGAGGGCCAGCAGAAAGTAATGCTGCAAACTACACAATAGATGGAAATGCTGGGGAGAGTGATCACGGGAGCAATGGACATGGGAGCAATGGACAGGACGGAACCATGACAATGAGGACAGTAAATGTGGAAAATGGCAATGTGGCTGTTGGGAGCATTGGAGTTGGTGGCATTGATAGGAAAACCATTGGGAATGGGGCAGATGAAGGACGACTTTCATTGAGAGAGGCTGCTTTGACCAAGTTTCGTCAAAAGAGAAAAGAAAGATGCTTTGAGAAAAGGGTTCGATATCATAGCAGGAAAAAACTAGCAGAACAGCGGCCTCGTATTAGGGGACAATTTGTTAGACGAATAGTGTCTGAAGCCAAAGAAGAAAAAGATCACCAAAGTGACAACCTGGTACCTGGGGATAATACCGACATTCCTCAATAA 2385 0.4231 MNNNVGKGKRGLAERNHMIFDKKSLNFGVANGGVSSGSSTEDDPRFNKLNQDGNNGLKGLIQINGSLQVSQQPPQGPVICWDRFLPVRSIKVLLVEDDDSTRHVVRALFCNCSYEVTAVSNGLQAWKVLENPENCIGLVLTEVAMPILSGIGLLCKIMNHKTLKNIPVIMMSSHDSMGIIFKCLSKGAVDFLVKPIRRNELKNLWQHVWRRCHSSSGSGSESATNFRKSTKSRSNDASENNSDSNEENDYGSKGLSIRDGSDNGSGTQSSWTKCLAQVGSPHPLSPHKQLVDPPDSTCAQVMQTKTEKASCRWVHATEKECLELIDHLDDVAMGKDLAVGISLSMQLEHRLEGLSSNPMGKGANKMSDDDDMQIVKGQSNACEKGEMECNGGKTRTQENQTMNVIDVTDSNSPQAESRDLNTPNGFSGFSLTKENSCPKEHPSLELTLKRLGEVRDPKNVTGEECNVLRHSDQSAFSKYNTASSANQARTGNVGSCSPLANGSAAPNAEVINNFPSHSNVTPPNQQSNGSNNINDMASINTYLGTKPCTFDKMPESVRGLGSFNSSELRTIRNNSISSSQKKTYAREEYMEIVRGQVGSSEHEFKAEHTHYELHHYNHISRKAAVDLQSDHDLLLKRSTNTAQQCVSSNAFGGPAESNAANYTIDGNAGESDHGSNGHGSNGQDGTMTMRTVNVENGNVAVGSIGVGGIDRKTIGNGADEGRLSLREAALTKFRQKRKERCFEKRVRYHSRKKLAEQRPRIRGQFVRRIVSEAKEEKDHQSDNLVPGDNTDIPQ 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01244 794 MobiDBLite consensus disorder prediction 213 251 - -
Vian5g01244 794 FunFam Two-component response regulator-like PRR37 90 248 - -
Vian5g01244 794 Pfam Response regulator receiver domain 92 203 IPR001789 GO:0000160
Vian5g01244 794 ProSiteProfiles Response regulatory domain profile. 91 209 IPR001789 GO:0000160
Vian5g01244 794 PANTHER TWO-COMPONENT RESPONSE REGULATOR 91 361 IPR045279 GO:0009736
Vian5g01244 794 Pfam CCT motif 726 767 IPR010402 GO:0005515
Vian5g01244 794 MobiDBLite consensus disorder prediction 647 688 - -
Vian5g01244 794 Gene3D - 89 250 - -
Vian5g01244 794 SUPERFAMILY CheY-like 88 214 IPR011006 -
Vian5g01244 794 MobiDBLite consensus disorder prediction 772 794 - -
Vian5g01244 794 CDD psREC_PRR 92 195 - -
Vian5g01244 794 ProSiteProfiles CCT domain profile. 726 768 IPR010402 GO:0005515
Vian5g01244 794 SMART REC_2 90 205 IPR001789 GO:0000160
Vian5g01244 794 MobiDBLite consensus disorder prediction 213 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01244 Vian-Chr5 35122015 35152620 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01244 37 305 Response Regulator Gene Family AT5G60100 59.140 2.91e-88 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vian5g01244 Response_reg 4e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01244 K12129 - gmx:100785796 1075.85