Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01238 ATGTTAGATCTTAATCTCAATGCTGAGTGGACCGATTCGGCTCGTGACGGCGACTCGCCGGTTCCGTTAGAGGAGTTTCCTGAAGGTTCGCGGAACCAAATGGCGGAATCAGGGACTTCGAATTCCTCTGTGGTGAATGCGGACGGGTCCAGTAACGGCTGCTGCGACGAGGACTCGTGCTCCACGCGCGCTGATGACGTGTACACCTTCAATTTCGATATCCTTAAAGTGGAAGGCGCGAGCGACGTCGTAACGAAGGAGTTGTTTCCGGTGAGTGGAGGAGTGGCAACGTCGTCGTTTTCGGCGAGAAAAAGTTTCGTGGATCTCGCGTTCGATCGTGAGGGAGGAAACAGTGACATAAAGATGCTTCAGCCGCAGCCTCAGACTCAGACTCAGCAACCGGCGAAGAAGAGTAGGAGAGGACCAAGGTCTCGAAGCTCACAGTACAGAGGGGTTACCTTTTATAGAAGAACGGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGAGGATTTGACACGGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTATTAAGTTCAGGGGAGTTGATGCTGACATCAATTTCAATCTGAGTGATTATGAGGATGATCTTAGACAGTTGAAGAATTTGTCCAAGGAGGAATTCGTACATATACTGCGCCGCCAAAGTACTGGTTTCTCAAGAGGAAGTTCTAAATACCGAGGAGTTACTCTCCACAAGTGTGGCCGGTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGATTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAAATGCAACGGAAGGGAAGCAGTGACCAACTTTGAGCCAAGTACATACGAAGGAGAGATGAAATCTGCAGCCACTAATGAAGTTAACAATCATAATCTTGATCTCAATTTGGGCATAGCAACCCCAGGAACTGGGTCCAAAGAAAATTGGCAGCGACTTCAGTTCCCCTCTGTCCATTACAACACGCATGGTGGAATAAGTTCAATGATGGAAACAAATGTTGATTCAGGAGTTGGTAATCCATCTTTGAAAAGACTGGTTGTGAATGAAGACTGTCCTTCTGTATGGAATGGAATGTGTCCTAGTTTCTTTCCCAATGAGGAAAAAACAGAGAGAATGAACACGGAGCATTCGAAAGGACTGCCCAATTGGGCGTGGCAAACGCATGCCCAGGTCAATGCTACCCCAGTACCAACGTTCTCTGCTGCAGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCTCCCACTGCCACCTTTCCAACAAGATCTACGAACTCCAATCCCCAGAGTCTCTGTTTTACTTCATCCAGCATGCATTCGTCTGAATATTATTACCAGGTTAAGCCCCGGCAGGCACCACTGTAG 1446 0.4786 MLDLNLNAEWTDSARDGDSPVPLEEFPEGSRNQMAESGTSNSSVVNADGSSNGCCDEDSCSTRADDVYTFNFDILKVEGASDVVTKELFPVSGGVATSSFSARKSFVDLAFDREGGNSDIKMLQPQPQTQTQQPAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLSDYEDDLRQLKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMKSAATNEVNNHNLDLNLGIATPGTGSKENWQRLQFPSVHYNTHGGISSMMETNVDSGVGNPSLKRLVVNEDCPSVWNGMCPSFFPNEEKTERMNTEHSKGLPNWAWQTHAQVNATPVPTFSAAAASSGFSISATFPPTATFPTRSTNSNPQSLCFTSSSMHSSEYYYQVKPRQAPL 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01238 481 SUPERFAMILY DNA-binding domain 239 298 IPR016177 GO:0003677
Vian5g01238 481 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 118 329 - -
Vian5g01238 481 SMART rav1_2 240 303 IPR001471 GO:0003700|GO:0006355
Vian5g01238 481 SMART rav1_2 148 210 IPR001471 GO:0003700|GO:0006355
Vian5g01238 481 SUPERFAMILY DNA-binding domain 147 205 IPR016177 GO:0003677
Vian5g01238 481 CDD AP2 239 299 IPR001471 GO:0003700|GO:0006355
Vian5g01238 481 FunFam AP2-like ethylene-responsive transcription factor 147 206 - -
Vian5g01238 481 PRINTS Ethylene responsive element binding protein signature 241 252 IPR001471 GO:0003700|GO:0006355
Vian5g01238 481 PRINTS Ethylene responsive element binding protein signature 279 299 IPR001471 GO:0003700|GO:0006355
Vian5g01238 481 MobiDBLite consensus disorder prediction 121 137 - -
Vian5g01238 481 MobiDBLite consensus disorder prediction 1 56 - -
Vian5g01238 481 Gene3D AP2/ERF domain 147 205 IPR036955 GO:0003700|GO:0006355
Vian5g01238 481 Gene3D AP2/ERF domain 239 298 IPR036955 GO:0003700|GO:0006355
Vian5g01238 481 MobiDBLite consensus disorder prediction 32 56 - -
Vian5g01238 481 Pfam AP2 domain 239 289 IPR001471 GO:0003700|GO:0006355
Vian5g01238 481 Pfam AP2 domain 148 196 IPR001471 GO:0003700|GO:0006355
Vian5g01238 481 CDD AP2 148 206 IPR001471 GO:0003700|GO:0006355
Vian5g01238 481 ProSiteProfiles AP2/ERF domain profile. 240 297 IPR001471 GO:0003700|GO:0006355
Vian5g01238 481 ProSiteProfiles AP2/ERF domain profile. 148 204 IPR001471 GO:0003700|GO:0006355
Vian5g01238 481 FunFam AP2-like ethylene-responsive transcription factor 239 299 - -
Vian5g01238 481 MobiDBLite consensus disorder prediction 117 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01238 Vian-Chr5 35012133 35015456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01238 73 323 AP2-EREBP Transcription Factor Family AT4G36920 66.165 3.21e-99 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vian5g01238 AP2 2.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01238 K09284 - gmx:100788303 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00445 11 4208972 4212278 Vian5g01238 5 35012133 35015456 PCT