Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01233 ATGGATATGGTAAGAAGAGAGAAGTCTGTGTATGATACACTAAACATGTTAAACTTTGATGTCACCAAAAAATGTCTTGTTGGAGAGGGCTGGTGCCCTGTATTTGCAAAAACACAGATTCAGGAGGCACTGCAACGTGCAACATTTGACAGCAATTCTGAGGTTGGCATAATCTTTCATTCAATGGATGCACTGGAATCACCACCTACATATTTTAGGACCAACGTTTTCACAGGTCCATATCAGGAAATTGTTGATGCATATGGTGTTGCAAGATATCAAGAAGCAAACCCTGCAGTTTATACAGTTATTACATTCCCTTTTCTTTTTGCGGTGATGTTTGGCGACTGGGGTCATGGAATTTGCCTGTTGCTGGGAGCATTGGTTCTTATAGCACGTGAGAGCAAGCTCAGCACCCAGCGCCTTGGAAGCTTTATGGAGATGCTATTTGGTGGGCGCTATGTGATACTTTTGATGTCACTATTTTCTATTTATTGTGGGTTAATATACAATGAATTCTTCTCTGTTCCTTATCACATATTTGGTGCCTCTGCTTACAAATGCCGAGATAATACATGCAGGGATGCACATACTACTGGCTTAGTAAAATATCGAGAACCATATCCATTTGGTGTGGATCCCAGCTGGCGGGGAAGTCGATCAGAATTGCCTTTTCTAAACTCTCTCAAGATGAAGATGTCCATTCTGTTTGGTGTGGTGCACATGAACTTGGGAATTATATTAAGTTATTTCAATGCTCATTTCTTTGGCAGCTCACTGGATATAAGGTACCAGTTTGTGCCACAGATGATTTTCCTTAATTGTTTATTTGGGTATCTTTCCCTTCTCATCATTGTTAAGTGGTGCACTGGCTCTCAGGCAGATCTTTATCATGTAATGATTTACATGTTTTTAAGCCCTTTCGACAATCTTGGTGATAATCAATTGTTCTGGGGCCAAAGACCACTTCAAGTTGTGTTGTTGCTTTTGTCTGTAATTGCAGTTCCGTGGATGCTCTTTCCAAAACCTTTTATGCTAAAGAAGCTTCATAATGAGAGATTTCAAGGACGCACTTACGGTGTGCTTAATTCCTCTGAGGTTGATCTTGAGTTGGAACCAGGTTCTGCCAGGCAACGTGACGATGACTTCAATTTCACAGAAGTCTTCGTTCACCAAATGATTCACTCCATTGAGTTTGTTCTAGGTTCAGTTTCAAATACGGCCTCATATCTACGACTTTGGGCATTAAGCTTGGCTCACTCAGAACTTTCTACTGTTTTTTATGAGAAAGTCCTGCTACTTGCTTGGGGGTATGACAATCTTATCATTCGGTTGCTCGGACTAGCTGTCTTTTCCTTTGCAACTGCCTTTATACTATTAATGATGGAGAGTCTCAGTGCTTTTCTTCACGCGTTGCGTCTTCACTGGGTGGAATTTCAGAATAAATTTTACCATGGCGATGGATGCAAGTTCAAGCCTTTTTCCTTTGCTTCCTTAACAGAGGATGAAAGTTGA 1515 0.4092 MDMVRREKSVYDTLNMLNFDVTKKCLVGEGWCPVFAKTQIQEALQRATFDSNSEVGIIFHSMDALESPPTYFRTNVFTGPYQEIVDAYGVARYQEANPAVYTVITFPFLFAVMFGDWGHGICLLLGALVLIARESKLSTQRLGSFMEMLFGGRYVILLMSLFSIYCGLIYNEFFSVPYHIFGASAYKCRDNTCRDAHTTGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMSILFGVVHMNLGIILSYFNAHFFGSSLDIRYQFVPQMIFLNCLFGYLSLLIIVKWCTGSQADLYHVMIYMFLSPFDNLGDNQLFWGQRPLQVVLLLLSVIAVPWMLFPKPFMLKKLHNERFQGRTYGVLNSSEVDLELEPGSARQRDDDFNFTEVFVHQMIHSIEFVLGSVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLIIRLLGLAVFSFATAFILLMMESLSAFLHALRLHWVEFQNKFYHGDGCKFKPFSFASLTEDES 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01233 504 PANTHER VACUOLAR PROTON ATPASES 2 502 IPR002490 GO:0033179|GO:0046961|GO:1902600
Vian5g01233 504 Pfam V-type ATPase 116kDa subunit family 3 496 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01233 Vian-Chr5 34949359 34953774 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01233 4 497 Primary Pumps ATPases(2) AT2G28520 83.099 0.0 865
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01233 K02154 - gmx:100800799 969.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00449 11 4262767 4281767 Vian5g01233 5 34949359 34953774 PCT