Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01230 ATGAAGAACTTCTCTCGGTTTTCAGGTGACAGCTTTATTGGAAATCCATTGTTATGCGGAAATTGTCCCTTGGAAACGGTAAAACTTGATTGGAAAGCACGCTTGAGGATTGTTGTGGGAGCTTCTGAAGGACTTGCTTACCTCCATCATGACTGCAATCCTAGAATTATTCACAGGGATATTAAGTCCTCAAATATCCTGATAGACGAGAACTTTGAAGCTCAAAAGAAAGCAGTGGATAATGATTCCAACTTGCATCACTTGATATTATCTAAGGCAGATAACAACACTATAATGGAGACTGTGGATCCTGAGGTGTCTATTACCTGCATGGATCTGACCCATGTTAAGAAGACCTTTCAGCTTGCTCTTCTTTGCACAAAAGGAAACCCTTCTGAGAGGCCAACTATGCATGAGGTTGCCAGGATTTTGGCATCACTACTCCCAGCACCTCCCAGCAACATCTTTGCTCCTCCTTCAAAGACCATTGATTATGCACAATTTGTGATTCAAAAGGGAAACAATCTCCATCTCCACAGATGGAAAGGTTACAATCTCAGAAGTGCTCTAATGATCAATGATTTGTTCGCATTGAGAATGTTGTATCAAATAACAGCCTATAGGCAAAAAGCCAAAGGTTGGGGTGAAGAGGGTGGTGAAGGAACTCTAATCATTTTGGAAATTATTTGA 690 0.4101 MKNFSRFSGDSFIGNPLLCGNCPLETVKLDWKARLRIVVGASEGLAYLHHDCNPRIIHRDIKSSNILIDENFEAQKKAVDNDSNLHHLILSKADNNTIMETVDPEVSITCMDLTHVKKTFQLALLCTKGNPSERPTMHEVARILASLLPAPPSNIFAPPSKTIDYAQFVIQKGNNLHLHRWKGYNLRSALMINDLFALRMLYQITAYRQKAKGWGEEGGEGTLIILEII 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01230 229 SUPERFAMILY Protein kinase-like (PK-like) 28 144 IPR011009 -
Vian5g01230 229 ProSitePatterns Serine/Threonine protein kinases active-site signature. 56 68 IPR008271 GO:0004672|GO:0006468
Vian5g01230 229 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 28 74 - -
Vian5g01230 229 ProSiteProfiles Protein kinase domain profile. 1 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g01230 229 Gene3D Transferase(Phosphotransferase) domain 1 23 74 - -
Vian5g01230 229 Gene3D Transferase(Phosphotransferase) domain 1 75 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01230 Vian-Chr5 34910634 34912491 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01230 24 74 Receptor kinase-like Gene Family AT5G62230 80.392 7.32e-23 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Vian5g01230 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01230 K20718 - var:108339444 286.96