Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01224 ATGGAGAGCAGTGACACATACACCCCTACTTCCTCTGCTCCACTTTCTCACTCCCCCACTTCCTCTTCTTCTTCACCACCACCTCCTCCACCTCCCACTGTTGTCATGAGCCCTTGTGCTGCATGCAAGATTTTGAGGAGAAGATGTGCTGAGAAATGTGTTCTGGCACCTTATTTCCCTCCCACTGAACCTGCAAAGTTTACCATTGCTCACCGTGTGTTTGGTGCCAGCAACATCATCAAGTTCCTACAGGAACTTCCAGAGTCTCAGAGGGCTGATGCAGTGACCAGCATGGTTTACGAGGCTAGTGCAAGAATAAGAGACCCTGTTTATGGCTGTGCAGGAGCAATCTGCCAGCTCCAGAAGCAGGTGAATGAACTTCAAGCACAATTGGCCAAATCACAAGCTGAGCTTGTAACCATGCAACTTCAGCAAGCCAATCTTGTGGCTCTGATCTGCATGGAAATGGCACAGAGTCCACAGGAATCACCACAACAATCAGTCGACAATTTCATTTCAACTCCTCCTCACACCGGTGGCTATCAAAGCGGCGTGAACAACTTCTTTGAGGAGAACACTAGCCCAAACTCACTATGGGAGCCCCTTTGGACTTGA 615 0.4927 MESSDTYTPTSSAPLSHSPTSSSSSPPPPPPPTVVMSPCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVTSMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAKSQAELVTMQLQQANLVALICMEMAQSPQESPQQSVDNFISTPPHTGGYQSGVNNFFEENTSPNSLWEPLWT 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01224 204 ProSiteProfiles LOB domain profile. 37 138 IPR004883 -
Vian5g01224 204 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 37 163 - -
Vian5g01224 204 MobiDBLite consensus disorder prediction 1 20 - -
Vian5g01224 204 Pfam Lateral organ boundaries (LOB) domain 38 135 IPR004883 -
Vian5g01224 204 Coils Coil 117 144 - -
Vian5g01224 204 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01224 Vian-Chr5 34799221 34800674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01224 34 204 AS2 family AT2G28500 66.484 1.91e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vian5g01224 LOB 2.6e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01224 - - gmx:100789504 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01224 5 34799221 34800674 Vian5g01224 5 34799221 34800674 ECH
Vian11g00455 11 4340601 4341270 Vian5g01224 5 34799221 34800674 PCT