Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01223 ATGGACTTTAGAGAAGACTTTACCTTCCTGTCGGAACAGCGCCGGGAGTTCGCCACGGCGGAGGTCATAGAATCCGACCTGGAATTTGCCTTTGACCTCCAATTGCAGGAGGCTCTCGAGGCCTCCCTCGCTTTGAATCCGTCTTCTTCCTCCGCTGTTATCGAACAGCCTACTGTTGACGAGCTGAACGCGACCTCAGTGCAGAGTGAGGAGTTGGCGCGTGTGGAGTGCGAGATGAAGGACAAGGAGCAGAGCGAGAGGGAAATGCAGAAGATGAGGGAGGATCTCTGTCGAAGGATCCACGACGAGAAGGTGGCGAGGGATATATTGACGATTTCTGAGGCGGATTGGCAGCAGTGGGGCGATAACTTTGAGAAGCCGTTCGGTGAGGGTTCATCATCTTCGGGTAGGACGGAGACGGAGGAAGGCTGGGTTAGGGTTTACTTGAAGGGTTTGGTGAGCGAGGAAAACGTGAGGGGGGAGAAGGTTGTGTTATCTGGGATAGGGTTTGCGATTTGTGACCGTAGTGATAATTTGATATTTGAGGTTTCTAAGTCGGTGATTGAGAATGGCACTAGCAAGGTCGCTGTGGAGATTAAGGCGTTGATTGAAGCCTTCAATATGGTCCTTGCTTTGGAATTAAAGCGCATAGTTTACTATACCGATTATTATCCACTTCTCCAATATGTGAGAGGAAACTGGTCTGCAAAACAGCGGAAGATTGCCATGCTGGTTGATCAAGTTCATCTGCTTCAGAGGAAGTTTACATACTGCGATTCAAGGCTTTTGGCCAGAAATGATGTCAAGTTTGCATTTAAGCTTGCGAGGGATGCGATTGTGTCTCAGTCTATGAGACCCTCGGGACCTGGGAGTACAAGGAGTTTGAATGAAAATTGTGCTATATGTTTGGAGGATACTGATGTCAGTCAGATTTTTTCAGTTGATGGATGTCAACACCGCTATTGCTTTTCTTGCATGAAACAACATGTTGAGGTGAAGTTGCTTCATGGAATGGTGCCTAAGTGCCCTCATGAGGGATGTAAGTATGAGCTTCTGGTTGACAGCTGCCAGAAGTTCTTGACTCAAAAGTTAACTGATATCATGCGTCAACGCCAAGCGGAAGCTTCAATTCCTGTTGCTGAAAAAGTTTACTGCCCTTATCCAAGATGCTCTGCATTAATGACAAAAACTGAGGTCTTTGAGTACTCGAAAAATCTTATTGGTGAATCTGAACTGTCGGGACCCAAGAAATGCTTAAAATGTCATGGCCTTTTCTGTTTTAACTGCAAGGTCCCTTGGCATAGTGGTATGACATGTTTTATGTACAAAACGTTGAATCCCAACCCTCCTGCTGAAGATTTGAAGCTAAAGTTTCTGGCATCAAGGAGCCTATGGCGGCAGTGCGTGAAGTGTAACCATATGATTGAACTTGCCGAAGGTTGCTATCACATGACTTGCAGATGTGGTTCCGAATTTTGCTATAACTGTGGTGCTGAGTGGAAGGACAAAAAAGCAACGTGTTCTTGCCCACTCTGGGCAGAAGACAATATTTGGATGGAGGAGAGAGACTTGGACGAGACTGACGATGATGATGACGTCTTTGGAGGATGGCTTTGA 1617 0.4663 MDFREDFTFLSEQRREFATAEVIESDLEFAFDLQLQEALEASLALNPSSSSAVIEQPTVDELNATSVQSEELARVECEMKDKEQSEREMQKMREDLCRRIHDEKVARDILTISEADWQQWGDNFEKPFGEGSSSSGRTETEEGWVRVYLKGLVSEENVRGEKVVLSGIGFAICDRSDNLIFEVSKSVIENGTSKVAVEIKALIEAFNMVLALELKRIVYYTDYYPLLQYVRGNWSAKQRKIAMLVDQVHLLQRKFTYCDSRLLARNDVKFAFKLARDAIVSQSMRPSGPGSTRSLNENCAICLEDTDVSQIFSVDGCQHRYCFSCMKQHVEVKLLHGMVPKCPHEGCKYELLVDSCQKFLTQKLTDIMRQRQAEASIPVAEKVYCPYPRCSALMTKTEVFEYSKNLIGESELSGPKKCLKCHGLFCFNCKVPWHSGMTCFMYKTLNPNPPAEDLKLKFLASRSLWRQCVKCNHMIELAEGCYHMTCRCGSEFCYNCGAEWKDKKATCSCPLWAEDNIWMEERDLDETDDDDDVFGGWL 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01223 538 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 377 IPR013083 -
Vian5g01223 538 CDD Rcat_RBR_unk 465 500 - -
Vian5g01223 538 Gene3D - 146 284 IPR036397 GO:0003676
Vian5g01223 538 ProSiteProfiles Zinc finger RING-type profile. 299 343 IPR001841 -
Vian5g01223 538 Gene3D - 437 532 - -
Vian5g01223 538 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 57 516 IPR031127 GO:0004842|GO:0016567
Vian5g01223 538 SMART ibrneu5 452 509 IPR002867 GO:0008270
Vian5g01223 538 SMART ibrneu5 366 439 IPR002867 GO:0008270
Vian5g01223 538 Coils Coil 72 95 - -
Vian5g01223 538 ProSiteProfiles TRIAD supradomain profile. 295 519 IPR044066 -
Vian5g01223 538 SUPERFAMILY RING/U-box 298 378 - -
Vian5g01223 538 FunFam RBR-type E3 ubiquitin transferase 145 282 - -
Vian5g01223 538 CDD BRcat_RBR_unk 379 442 - -
Vian5g01223 538 FunFam RBR-type E3 ubiquitin transferase 437 535 - -
Vian5g01223 538 FunFam RBR-type E3 ubiquitin transferase 294 379 - -
Vian5g01223 538 Pfam IBR domain, a half RING-finger domain 380 439 IPR002867 GO:0008270
Vian5g01223 538 Pfam IBR domain, a half RING-finger domain 458 507 IPR002867 GO:0008270
Vian5g01223 538 Pfam Reverse transcriptase-like 163 278 IPR002156 GO:0003676|GO:0004523
Vian5g01223 538 ProSitePatterns Zinc finger RING-type signature. 317 326 IPR017907 -
Vian5g01223 538 SUPERFAMILY RING/U-box 453 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01223 Vian-Chr5 34770514 34773857 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01223 146 498 C3H Transcription Factor Family AT2G19610 33.148 5.60e-62 207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01223 5 34770514 34773857 Vian5g01223 5 34770514 34773857 ECH