Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01213 ATGGGAAAGAAGCAGAAAGTCGTTCTTCCGCCGGACCTTCCCCCGGAGGTTCTAGACGACGAAGTTGAGGTTTCCGACGAAGACCTCCAATTCATCAAAGAGAATCGCAACTATGCCTCCTTGCTCTCCACCTTGGACACCCATTCAATCACCAAGCATGTTACGCGGGTTGCTGATGCCAAAGACGATGCATTGGAGAAACTTTATGAGAAACGCATGCAAAAAAATGCTCTCAAGAAAGAAAAAGAAGAAACTGGTTTGCAGGTTGATCGTGTAGATGCTCTTCCAATCAAGACATTGGATGGAAAACTCCATTACCGGACAGCTTCAAAAGCCGTATCAGAAAATGATCTAAGTGAAGAGGGAACTGCAGAGGATGCCATTGCGGATGAAGGTATGGTGAAGCTAACTAAGGCTGAAAAGAGAGCCAAACTTAAGAAAATGAAGAAGGAGGCCAAAAAACAAGGGAAAGAAGTGGCTAAAGTAGAAGTGGAAGAGACACCACATGCAGCAGTGCTGGCTGAGGTAAAGGAAGATCTTACAGCTGAGGAGACATTTGAAAGCAAGAAGTGTAAACTTGCAGAATTGGGGAATGCCTTACTTACAGATCCAGAGTCCAACATTAAATTACTGAAAGAGATGGTGCAATTATCTAAAGATAACGATCATACCATTGTTAAGCTTGGACTTCTATCCCTCTTGGCAGTTTTCAAAGATATTGTCCCTGGTTATCGGATCAGGCTTCCTACTGAAAAGGAACTAGAAATGAAGGTTTCAAAGACTGTTAGAAAGATGCGTTATTATGAGTCTACTCTTCTTTCAGCATACAAGGCATATTTGCAAAGGCTGGTAGCCTTAGAGAAGAAGCCTTTATTTCAACATGTAGCAGTTCGTTGTATTTGTTCTTTGCTTGATGCAAATCCCCATTTCAACTTTCGTGAAAGTTTGTTGGATGCTACTGTCAGAAACATAGGCTCTACTGATGAGGCTATAAGGAAAGTTTGTTGTTCCACGATTAAATCACTCTTTACAAATGAGGGTAAACATGGGGGTGAGGTCACTGTTGAGGCAGTTCGATTGATTGCCGATTATGTTAAAGCTTACAATTGCCAATTGCACCCAGATTCTGTTGATGTTTTCTTGTCCCTTTCATTTAATGAGGATCTCTTGAAGTCTGGAAAGACAGAAGAGGATCAGAAATTAAAAGATAAGAAAAGTAAGAAAAGGAAACACACTGATGCATCAAATCAGTTGATGGAGAATGATAGAAAGAAAAGTAGGCAAGAATCGATTTCTAAGACAAGAAAGGAGGTTGAAGCTGATTACAAGGCTGCATCCTTTGCCCTGGATGTTATGGAGAGGAAACAGATGCAAACTGAAACACTCTCTGCTGTCTTTGAGACGTACTTTCGTATTTTGAAGCATACAATGCAGTCCATCGGTGCCAGGCCTGAAGCTAACGCTGGGGCATTATCTGCTGCAGTGGAACCCCTCCCTTTGCTTGCTCCTTGTCTGAAAGGACTGGCAAAATTCTCACATCTGATTGACCTTGATTTCATGGGTGATCTGATGAATCATCTGAAAGTACTTGCTTCTGGAAGTAGCAATTCAGGCAACACTTCTGACAAGTGTTCCAAATGTTTGAGTGTATCGGAACGTCTCCAATGCTGCATTGTTGCCTTTAAAGTGATGAGGAACAATCTTGATGCCCTGAATGTTGATTTACAGGACTTCTTTATCCATCTTTACAATCTTATTCTTGAATACAGGCCAGGAAGAGATCAAGGAGAGGTTTTGGCAGAAGCTTTGAAGATAATGTTGTGCGATGATAAGCAACATGACATGCAAAAGACTGCTGCATTTATAAAACGATTAGCAACATTTTCACTGTGTGTTGGATCAGCAGATTCCATGGCTGCCTTGGTCACCGTAAAGCATCTCCTTCAGAAGAATGTCAAGTGCAGAAATTTGTTGGAAAATGATATTGGAGGAGGCTCTGTTTCTGGCACAATTCCTAAATATCTACCACATTCCACAGATCCCAATTTAAGTGGTGCCCTTGCCTCGGTACTTTGGGAACTCAATCTTTTGTCCAGCCATTATCATACAGCTATATCAACACTGGCCTCGGGAATTTCAAGTATGAGTACTGCACATAACCAGGTTCTTTTATCCAAGTCCTCTCCTCAACTAGCTTTTAAGGAAATGTCTCTGGACCAAGAATTATGTTTCACACAACAAACTGGCAGTATAAAATTAAAAAACAAGAGACGAACAAATGGCCCTGCTGCATCACTTTCCATTGGTTCTACAACTGTCAAGAGTTCATTTGATGACAATGAGTTGCAGAGGAAACTTGTTTCCCATTTCATGGTTCATCATGACATCAAGGAAAATGAAAGGTTGAGAAAAGAGCTGGACAGGACTGCATTATCGCTACAGCTATATGAACAATATAAGAAACAAAAGAAACAATCAAAACCAAGGAGATGA 2493 0.4116 MGKKQKVVLPPDLPPEVLDDEVEVSDEDLQFIKENRNYASLLSTLDTHSITKHVTRVADAKDDALEKLYEKRMQKNALKKEKEETGLQVDRVDALPIKTLDGKLHYRTASKAVSENDLSEEGTAEDAIADEGMVKLTKAEKRAKLKKMKKEAKKQGKEVAKVEVEETPHAAVLAEVKEDLTAEETFESKKCKLAELGNALLTDPESNIKLLKEMVQLSKDNDHTIVKLGLLSLLAVFKDIVPGYRIRLPTEKELEMKVSKTVRKMRYYESTLLSAYKAYLQRLVALEKKPLFQHVAVRCICSLLDANPHFNFRESLLDATVRNIGSTDEAIRKVCCSTIKSLFTNEGKHGGEVTVEAVRLIADYVKAYNCQLHPDSVDVFLSLSFNEDLLKSGKTEEDQKLKDKKSKKRKHTDASNQLMENDRKKSRQESISKTRKEVEADYKAASFALDVMERKQMQTETLSAVFETYFRILKHTMQSIGARPEANAGALSAAVEPLPLLAPCLKGLAKFSHLIDLDFMGDLMNHLKVLASGSSNSGNTSDKCSKCLSVSERLQCCIVAFKVMRNNLDALNVDLQDFFIHLYNLILEYRPGRDQGEVLAEALKIMLCDDKQHDMQKTAAFIKRLATFSLCVGSADSMAALVTVKHLLQKNVKCRNLLENDIGGGSVSGTIPKYLPHSTDPNLSGALASVLWELNLLSSHYHTAISTLASGISSMSTAHNQVLLSKSSPQLAFKEMSLDQELCFTQQTGSIKLKNKRRTNGPAASLSIGSTTVKSSFDDNELQRKLVSHFMVHHDIKENERLRKELDRTALSLQLYEQYKKQKKQSKPRR 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01213 830 Coils Coil 65 85 - -
Vian5g01213 830 SUPERFAMILY ARM repeat 203 593 IPR016024 -
Vian5g01213 830 Coils Coil 138 165 - -
Vian5g01213 830 PANTHER NUCLEOLAR COMPLEX PROTEIN 3 3 817 IPR016903 -
Vian5g01213 830 MobiDBLite consensus disorder prediction 394 435 - -
Vian5g01213 830 MobiDBLite consensus disorder prediction 410 435 - -
Vian5g01213 830 Pfam CBF/Mak21 family 554 709 IPR005612 -
Vian5g01213 830 PIRSF Noc3 2 826 IPR016903 -
Vian5g01213 830 Pfam Nucleolar complex-associated protein 189 279 IPR011501 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01213 1 806 Core DNA Replication Machinery Family AT1G79150 58.120 0.0 898
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01213 K14834 - gmx:100794797 1307.74