Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01211 ATGGAATTTGATCTGAACCATGAAGTGACTGAGGTTGAGAAGAATGCATTCGGTGATAGGGAACGTGAGAAAGATGCTGGTGTCAGTTGCTGGTCCTCTTCCACTTCTTCATCTTCCAGTTCCTCTTCGGCTCGTGTGTCCTCTTCTTACCTTGAACTTTGGCATGCTTGTGCTGGCCCCCTCACTTCTCTTCCCAAGAAAGGAAATGTGGTGGTCTATTTTCCACAAGGTCACTTAGAACAGGTTGCCTCTTTCTCTCCTTTCACACCAATGGAGATTCCCTCTTATGATCTTCAGCCACAGATCTTTTGCAGGGTTGTCAATGTCCAGCTACTTGCCAACAAGGAGAATGATGAGGTTTATACACAGGTTACTTTGCTTCCTCAGCCGGAGGGGGAACTAGTAAATTTTTTAGTAGTTCTGAATACACTGGATTCTTTTCAGTTGGAAGGGATGAATTCAGAGGGCAAAGAACTTGAGGAATTTGGAGCAGAAGAGGAGGGAGATGAAAGATCACCAACTAAATCAACCCCTCACATGTTTTGCAAAACACTAACTGCCTCGGATACCAGCACACATGGGGGCTTTTCTGTTCCTCGTAGAGCTGCGGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAGAGGCCTTCACAAGAGCTCGTTGCCAAAGACCTGCATGGTGTGGAGTGGAAGTTTCGTCACATTTACCGAGGTGAAAATGGTGAACTGAGATTGGGAATCAGAAGAGCTGTTCGACCTAGAAATGATCTTCCTGAATCAGTTATTGGTAGCCAGAACTGCTACCCGAATGTCCTTTCTTCCGTGGCAAATGCAGTATCCACCAAAAGCAAGTTTCATGTTTTCTACAGTCCAAGGGAAAGTCATGCAGACTTTGTTGTTCCATATCAAAGATATGTCAAAAGCATCAAGAATCCAGTGAGCATTGGAGCAAGATTCAAAATGAGACTCGAAATGGATGAATCTCAAGAAAGAAGGTGTAATAGTGGCACAATGATTGCAACTAGTGATTTGGATCCTTACAGATGGCCAAAATCAAAATGGAGGTGCTTGATGGTCAGATGGGATGAGGATATTGAGACTAATCATCAAGATCGAGTATCTCCATGGGAGATTGATCCTTCTGCTCCTCTGCCCCCTTTGAGCATTCAGTCTTCCCCAAGACTGAAGAAACTGCGGACAGGTCTACAGGTTGCCTCACCTAGTCAACTCATCACTGCACGAGGCAGTGGGTTGGTGGGTTTTGAGGAGTCTGTAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAATGCTGGTTTTGTGTCACTCTACTACGGATGTGACACGGTAACCAAGCCACTAGGTTTTGAGATGAGTTCTCCTAGTCATCCAAATCTTGGATCAGCTGAAGTAAGAAAGGCTACCTCTTCTGAGATTAGTAGTGTTCACCCTTTCAGTTATGCAGGCTTTGTGGAAACTAACAGGTTTCCGAGGGTCTTGCAAGGTCAAGAAATATGTCCATTGAAATCCCTGACAGGAAAGATTGATTTGAATCTTGGTACCTGGGGAATGCCCAATCTGGGTTTCAACCTCCACCAGGCAACCAAACCCAACTTTCAACCTACATTGTTCCCTTATGGGGACATTCACCAAGCTGTTCAACCTAGTTTGTTTTGCTCAAAATCCACCACTTTCCAAAGAGAAAATGTCCCATTTAATAAACCATCCACTCAGGCAGGGATCATTGTAAATGAAGTTGGACAACCAGAACTCCCAAATGAGCATAAGCTGCAGGACAATCTTTCTGCTGCTGCTGCATTAGGGGCTGCAAATATGGGGGTTCCTAATGACAATAACGTCCAGGGAAAAGTAAATGCCTGCAAACTATTCGGGTTTTCTTTATCTGGGGAAACCACTGCCCAAAATTTACAGAACTCTGCTAAAAGGAGCTGCACAAAGGTTCACAAGCAAGGCAGCTTAGTTGGAAGAGCTATTGATCTTTCAAGACTGAGCAGCTACAATGATCTGCTGATTGAACTAGAGAGACTATTTGGCATGGAAGGCCTTCTAAAAGATCCTAACAACGGATGGAGGATCCTCTACACTGATAGTGAGAATGACATAATGGTTGTGGGGGATGACCCTTGGCATGAGTTTTGTGATGTGGTGTCCAAGATCCATATATATACCCAAGAAGAGGTGGAAAAAATGACAATTGGGATCATCAGTGATGACACTCATAGCTGTTTGGAAGAGGCACCAATCATTACGGAGGCTTCGAAGTCTTCCTCTGTGGGTCAGCCAGATTATTCTCCAACAGCAGTTAGAGTCTAA 2334 0.4447 MEFDLNHEVTEVEKNAFGDREREKDAGVSCWSSSTSSSSSSSSARVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASFSPFTPMEIPSYDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQPEGELVNFLVVLNTLDSFQLEGMNSEGKELEEFGAEEEGDERSPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGENGELRLGIRRAVRPRNDLPESVIGSQNCYPNVLSSVANAVSTKSKFHVFYSPRESHADFVVPYQRYVKSIKNPVSIGARFKMRLEMDESQERRCNSGTMIATSDLDPYRWPKSKWRCLMVRWDEDIETNHQDRVSPWEIDPSAPLPPLSIQSSPRLKKLRTGLQVASPSQLITARGSGLVGFEESVRSPKVLQGQENAGFVSLYYGCDTVTKPLGFEMSSPSHPNLGSAEVRKATSSEISSVHPFSYAGFVETNRFPRVLQGQEICPLKSLTGKIDLNLGTWGMPNLGFNLHQATKPNFQPTLFPYGDIHQAVQPSLFCSKSTTFQRENVPFNKPSTQAGIIVNEVGQPELPNEHKLQDNLSAAAALGAANMGVPNDNNVQGKVNACKLFGFSLSGETTAQNLQNSAKRSCTKVHKQGSLVGRAIDLSRLSSYNDLLIELERLFGMEGLLKDPNNGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIYTQEEVEKMTIGIISDDTHSCLEEAPIITEASKSSSVGQPDYSPTAVRV 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01211 777 FunFam Auxin response factor 644 738 - -
Vian5g01211 777 Pfam B3 DNA binding domain 181 247 IPR003340 GO:0003677
Vian5g01211 777 Gene3D - 179 256 IPR015300 -
Vian5g01211 777 MobiDBLite consensus disorder prediction 14 43 - -
Vian5g01211 777 CDD B3_DNA 179 247 IPR003340 GO:0003677
Vian5g01211 777 MobiDBLite consensus disorder prediction 28 43 - -
Vian5g01211 777 ProSiteProfiles PB1 domain profile. 649 733 IPR000270 GO:0005515
Vian5g01211 777 SUPERFAMILY DNA-binding pseudobarrel domain 173 240 IPR015300 -
Vian5g01211 777 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 240 738 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vian5g01211 777 SUPERFAMILY CAD & PB1 domains 652 728 - -
Vian5g01211 777 Gene3D - 313 384 - -
Vian5g01211 777 Pfam AUX/IAA family 640 733 IPR033389 -
Vian5g01211 777 Gene3D - 645 738 - -
Vian5g01211 777 FunFam Auxin response factor 313 386 - -
Vian5g01211 777 Pfam Auxin response factor 276 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01211 Vian-Chr5 34611641 34616634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01211 46 777 B3 DNA Binding Superfamily AT5G60450 55.742 0.0 764
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vian5g01211 AUX_IAA 6.4e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01211 - - gmx:100783513 1354.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00458 11 4381636 4387212 Vian5g01211 5 34611641 34616634 PCT