Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01206 ATGATGTCTGAAGAATCCTTTTCTGTTCCTCCCAACACCGTCAGAGACTCCTTGGTTCATGTTCAACCCCCCAGCTCAAACCCTAATAATAACAATCCTAATCCTAGTTCAAATCCAGCTAAGAGAAGGAGAAGTCTACCCGGAACACCAGATCCAGATGCAGAAGTGGTGGCTCTGTCACCTAAGTCCCTCATGGCCACCAACCGTTTCTTATGTGAAATTTGCAGCAAGGGTTTTCAGAGAGACCAGAATTTGCAGCTCCACAGACGCGGCCACAACCTCCCGTGGAAGCTGAAGCAGAGAGCAAACAAAGATCAAGTGAGGAAGAAGGTGTATGTGTGCCCTGAGAAGAGTTGTGTGCATCACGATCCCTCTAGAGCCTTGGGAGACTTGACTGGCATAAAGAAACACTATAGCAGAAAGCATGGGGAGAAGAAGTGGAAGTGTGAAAAGTGCTCCAAGAAATATGCTGTTCAATCTGATTGGAAGGCCCATAGCAAGATTTGTGGGACTAGAGAGTACAAATGTGACTGTGGCACTCTTTTCTCCAGGAAGGATAGCTTCATAACGCATAGAGCCTTTTGCGACGCTTTGGCTGAAGAAAGTGTGAGGATAACAACAGTTCCGGCGGCTTTAAGCAACTTGAGAAATGATCATCATTTGACCAATGCTCAAGCTTCGAGGATCCCTCAGATTTTTTCAGGGTTTCACTCAGATCAATTCGGTGGTTCAGGAACATCAGAATCATTGGTGAATTATGCTGAGGCAAACCATCATCATCATCAACAACAACAGCAGCTGCAGCAAAAGCTAAGGTTACCACTCTGGCTAGATCACCAGGCGAATTCACAAGTACTTCACCACCCCCTTATTAACTTCCCAACCAAACCAAGTGATTTCAGTTCTTCGGGGCTAAACCCCGTGCCTGATGTGGTGCAAACGATGGACATGTTTGGGCCACAGTTTGTGAATTACCGTTACCCAGAAGCGTCATTTGGAGGTGCCAACCTGTCTGTGCTGCCGCCACATGGACTGAAGCAGGAACAAGAAGAAAACAAAGGAGAGTTGTCGCATAGCGCAAGCTCCAACTTGTACTTGAGTAGTAATCAGAACCCACCTCACTACATGTCAGCCACCACAGTGTTGCAGAAAACTGTTCAAATGGGATCTACTAGGGTGAACGACAACGCGTTTTGCTCCACGGGCAGAAATAGGAACGGCAACCACAACAATGTTGTCAACAACGTTGTTGTTGAGGTTCAGAAGCTGGACGACTTGGTGAGTGTGGAAGGGTGCACCAACCTTGGAGGTGGTGGTGGTGGGTATTTATTGAATGGTGACTCAAACAACTCGTTTGTGGTTGTGAATGGCACCAAGGGTTTGGAGCACATGGTGATGCCGGTGGATGAAGAGACAACAGCAGCATCAATTATGGGAAAACAATTACACTCCATAAGCTCACACAGCAAAAATCAACTCGGTTTAACCCGAGATTTTTTGGGTGTCGGAGATAACAACATTGAATCAATAAGGAGACCTTTTTTCGAGCAAGATCTTGTTGAATTTAATGCAATGGGGTCAGGCTCAGGCATGAACCTGCAGAGCCAGTACGGTGGACACTATGTCTAG 1629 0.4659 MMSEESFSVPPNTVRDSLVHVQPPSSNPNNNNPNPSSNPAKRRRSLPGTPDPDAEVVALSPKSLMATNRFLCEICSKGFQRDQNLQLHRRGHNLPWKLKQRANKDQVRKKVYVCPEKSCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRKDSFITHRAFCDALAEESVRITTVPAALSNLRNDHHLTNAQASRIPQIFSGFHSDQFGGSGTSESLVNYAEANHHHHQQQQQLQQKLRLPLWLDHQANSQVLHHPLINFPTKPSDFSSSGLNPVPDVVQTMDMFGPQFVNYRYPEASFGGANLSVLPPHGLKQEQEENKGELSHSASSNLYLSSNQNPPHYMSATTVLQKTVQMGSTRVNDNAFCSTGRNRNGNHNNVVNNVVVEVQKLDDLVSVEGCTNLGGGGGGYLLNGDSNNSFVVVNGTKGLEHMVMPVDEETTAASIMGKQLHSISSHSKNQLGLTRDFLGVGDNNIESIRRPFFEQDLVEFNAMGSGSGMNLQSQYGGHYV 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01206 542 SUPERFAMILY beta-beta-alpha zinc fingers 69 167 IPR036236 -
Vian5g01206 542 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 28 512 IPR031140 -
Vian5g01206 542 SMART c2h2final6 147 167 IPR013087 -
Vian5g01206 542 SMART c2h2final6 112 142 IPR013087 -
Vian5g01206 542 SMART c2h2final6 70 92 IPR013087 -
Vian5g01206 542 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Vian5g01206 542 MobiDBLite consensus disorder prediction 1 43 - -
Vian5g01206 542 FunFam protein indeterminate-domain 12-like 49 118 - -
Vian5g01206 542 Gene3D Classic Zinc Finger 49 123 - -
Vian5g01206 542 MobiDBLite consensus disorder prediction 1 55 - -
Vian5g01206 542 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
Vian5g01206 542 Gene3D Classic Zinc Finger 125 204 - -
Vian5g01206 542 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01206 Vian-Chr5 34535611 34537677 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01206 40 217 IDZ Gene Family AT3G45260 83.146 2.03e-112 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian5g01206 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01206 K25870 - gmx:100817691 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00465 11 4454032 4455896 Vian5g01206 5 34535611 34537677 PCT