Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01182 ATGAGTACAGAGGAAAAGCCTGTGAATGACGAACATGAAGCAGGTTCTTGCAGACGAACAGTTTCTCTTCCAGTTCAAAAGGTTGATGATCCAATGGGGATAACTGAAGAAGCCTCGCATGTTCCTCCTCGGAAGCGACAGAATCTTCTCCTAGAAATACCATCAAGAACAGAAGAGAGTTCTCAAGATTTTGTTGCGATCAAAATGCCACCAACACCAAGTTCCAATCCCACTCCTACTCCAAAGAGAGTGAATTTTCTTGTGAGTTCTCGCTCTGTTGATCCTCCAGCACATAACTCTCCTGGGCCTTCAACATCAAGAGGAAAATCAGCCATAAGAAGCCTGCTCCCAAAACTGAGCTTCAGGTATCGAACACCAGCAGCAGATGTTGAAAAGGCAAATACCGCAGCTCCAGAAGTTTCCTCTTCAGGCATTGGAGAAAAGCCTTCAATTGCAAGATCATTGTCTCTTACTAAGATATTTACTCCTCGGATTAAGAGAACGTCATCGTTACCACTAGATGAAATTAGACAATCAAACAATGAATCTTCTCATGGTGGAAGTGTTGGTGGTCCTCTAAATAAAAAAGAAGCCCAGAGGAAGATAGCTCGCTCTCTTTCAGTACCTGCCAACAACAAAGACAAAAGCTTAAGGAGGATGGATTCATTTTTTCGCATTGTTCCTTCCACTCCTCGAGTAAAGGAAGGAGATGTATTGGTAGACACATCAACAAACGATGCTGAAAATGAAGATGCTAATGGTGAAGATATAGCCGAAGAAGAGGCCGTGTGTAGAATCTGTCTGGTTGATCTGTGTGAAGGAGGTGAGACCTTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCACTGGCTCACCAAGAATGTGCTATTAAATGGTTTAGTATAAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGAAGTTCGGAACCTACCTGTCACTCTATTAAGGATCCAAAGTGTTCGAAATCGGAATATTGGTGCAAATAGGTCTCAGCTGGAAGATGCAAACGGATACAGGGTATGGCAGGAAGTCCCAGTTCTTGTCATTGTCAGCATGCTAGCGTATTTCTGCTTTCTTGAGCAGCTATTGGTTGGAAAAATGAGTACTGGTGCAATTGCCATATCTCTTCCATTTTCCTGTGTACTGGGTCTACTTTCCTCCATGACATCATCAACCATGGTGAAGAGCAGGTTCATCTGGATTTATGCTTCTGTCCAGTTTGCTATGGTGGTTCTCTTTGCGCATATTTTTTACTCCGTGGTTCGTGTGCAAGCTGTTTTGTCTATCCTTCTGGCCACATTTGCTGGTTTTGGTGTGGTGATGAGTGGCAGTTCTATTCTTGTGGAGTTTTATAGATGGAGAAGAAGATTGCAGGCATCAGAACACCGACAAGGCCCTCAATTGGTGCCACAAACAGGACAAAATCCACAATCTTCAAACACTCCTAATTCAGATTCAGGTTCAGGTCCTTCAAACCACAGTCAACCTGTGGTGCAAAATGAACAGAACTCAAATCAGAGTTGA 1548 0.4348 MSTEEKPVNDEHEAGSCRRTVSLPVQKVDDPMGITEEASHVPPRKRQNLLLEIPSRTEESSQDFVAIKMPPTPSSNPTPTPKRVNFLVSSRSVDPPAHNSPGPSTSRGKSAIRSLLPKLSFRYRTPAADVEKANTAAPEVSSSGIGEKPSIARSLSLTKIFTPRIKRTSSLPLDEIRQSNNESSHGGSVGGPLNKKEAQRKIARSLSVPANNKDKSLRRMDSFFRIVPSTPRVKEGDVLVDTSTNDAENEDANGEDIAEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQSVRNRNIGANRSQLEDANGYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMSTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASVQFAMVVLFAHIFYSVVRVQAVLSILLATFAGFGVVMSGSSILVEFYRWRRRLQASEHRQGPQLVPQTGQNPQSSNTPNSDSGSGPSNHSQPVVQNEQNSNQS 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01182 515 MobiDBLite consensus disorder prediction 470 515 - -
Vian5g01182 515 MobiDBLite consensus disorder prediction 1 17 - -
Vian5g01182 515 Pfam RING-variant domain 264 311 IPR011016 GO:0008270
Vian5g01182 515 MobiDBLite consensus disorder prediction 171 210 - -
Vian5g01182 515 MobiDBLite consensus disorder prediction 53 71 - -
Vian5g01182 515 PANTHER OS02G0165000 PROTEIN 24 471 - -
Vian5g01182 515 MobiDBLite consensus disorder prediction 1 110 - -
Vian5g01182 515 SMART ringv_2 263 312 IPR011016 GO:0008270
Vian5g01182 515 MobiDBLite consensus disorder prediction 79 110 - -
Vian5g01182 515 MobiDBLite consensus disorder prediction 172 188 - -
Vian5g01182 515 MobiDBLite consensus disorder prediction 472 515 - -
Vian5g01182 515 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 319 IPR013083 -
Vian5g01182 515 CDD RING_CH-C4HC3_MARCH 264 312 - -
Vian5g01182 515 ProSiteProfiles Zinc finger RING-CH-type profile. 256 318 IPR011016 GO:0008270
Vian5g01182 515 SUPERFAMILY RING/U-box 260 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01182 Vian-Chr5 34328521 34333537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01182 261 318 C3H Transcription Factor Family AT2G37950 49.153 3.83e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01182 - - gmx:100815566 886.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00472 11 4558177 4561731 Vian5g01182 5 34328521 34333537 PCT