Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01177 ATGCAATCTCTAAAGTCACACCCTGCTCTTTTATTTTCACTTTTCAATCAATTCTCTTCTCAGTCTCTGACATCCTTCCTCTCTTTCTCAACTAAATGCCGTTGCCTACACTTCAACGAAACCACTTCAATGATTGATTACCTAAATTCCAACTTCCAGTTCTCCAAAACCCAATCCCTTTATATCTCCAAACGTGTTTCACGGGGCAAATTCCCTCAAAACCCCTTATCAGTGCTCACTTTCTTCAAACAAATAGGCTTTTCGCAAAGCCAGATTCTCTCTGTGATTCGTCAAAGACCTCAGATACTGTTTACAGACGTTGACAAAATCTTAAGATCCAAAATTGAGTTCTTTCAGATGTCTGGATTCCAGGGTCGCGAGTTATGCAGCTTCATTTCAAAGAATCCCTCCATTTTGACTCATAGCTTGAAGAAAACATTGGTCCCCTCAGTTGAAGCTATTAGGAAAATTGTGTGCGACCAGAAAGATTTTATTCTTGTGTTGCACAGATGTGGCTGGATACTCCCAAAGTACAAAAGGTTTATGGATAATGCCGTCTTCTTGGAGAGGTGTGGCATTCTTGGGACTCATCTTGCATTGCTACTCAAACTTCACCCAAGGCTTTTCATTGCACAGCAGTCCACTATTCAAAACCGTGTTTCTCGAGCTGTAGACTTGGGTTTCCGTGAAAATTCAAGAATGCTTGTCCATGCAATTCATACATTAAGTTGTTTGAGCGATAAAACATTTGAGAGAAAGCTGAAACTAATTAATAGTTTTGGGTTTTCCAACGATGAGGGCCTACAAATGTTCAAGAGAACCCCGACTTTGTTCAGAACATCAGAGATGAAGTTGAAAGTTGGAATGAAATTCCTCTTGCACACAGTTATGCTGCCCAAGTCAGTCCTTATTCACCAGCCTCAGATTTTAATGTACAGCATGGAGGATCGCGTGCTTCCTCGATATAAAGTCTTCCAGCTGTTGAAATCAAAAAATCTCTGCAAGAAAGTCCCCAGTTATATTCATGTGTTGTGCTTGTCTGAGGAGATGTTTTTGGACAAGTATATATCACAGTTCAGGGAAAATGCAGAGGAGTTATTAGTAGCATACAAGGGTCATTATCTGGAGGCATAA 1134 0.4039 MQSLKSHPALLFSLFNQFSSQSLTSFLSFSTKCRCLHFNETTSMIDYLNSNFQFSKTQSLYISKRVSRGKFPQNPLSVLTFFKQIGFSQSQILSVIRQRPQILFTDVDKILRSKIEFFQMSGFQGRELCSFISKNPSILTHSLKKTLVPSVEAIRKIVCDQKDFILVLHRCGWILPKYKRFMDNAVFLERCGILGTHLALLLKLHPRLFIAQQSTIQNRVSRAVDLGFRENSRMLVHAIHTLSCLSDKTFERKLKLINSFGFSNDEGLQMFKRTPTLFRTSEMKLKVGMKFLLHTVMLPKSVLIHQPQILMYSMEDRVLPRYKVFQLLKSKNLCKKVPSYIHVLCLSEEMFLDKYISQFRENAEELLVAYKGHYLEA 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01177 377 SMART mt_12 199 229 IPR003690 GO:0003690|GO:0006355
Vian5g01177 377 SMART mt_12 300 331 IPR003690 GO:0003690|GO:0006355
Vian5g01177 377 SMART mt_12 233 263 IPR003690 GO:0003690|GO:0006355
Vian5g01177 377 SMART mt_12 129 160 IPR003690 GO:0003690|GO:0006355
Vian5g01177 377 SMART mt_12 93 124 IPR003690 GO:0003690|GO:0006355
Vian5g01177 377 SMART mt_12 268 299 IPR003690 GO:0003690|GO:0006355
Vian5g01177 377 PANTHER CGI-12 PROTEIN-RELATED 41 358 IPR003690 GO:0003690|GO:0006355
Vian5g01177 377 Pfam mTERF 245 352 IPR003690 GO:0003690|GO:0006355
Vian5g01177 377 Pfam mTERF 151 255 IPR003690 GO:0003690|GO:0006355
Vian5g01177 377 Pfam mTERF 79 168 IPR003690 GO:0003690|GO:0006355
Vian5g01177 377 Gene3D Transcription termination factor 3, mitochondrial 177 362 IPR038538 -
Vian5g01177 377 FunFam Mitochondrial transcription termination factor-like 143 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01177 Vian-Chr5 34306907 34308040 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vian5g01177 mTERF 2.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01177 K15032 - vvi:100268158 329.331