Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01175 ATGGCTGAAGATGTTGAGATTCAAGAGCAAAGAGAATACCCTGCAAAAGACTATTATGACCCTCCTCCAGCACCTTTTTTCGACCGCAGAGAGCTCACACAGTGGTCCTTCTATAGAGCCATTATCGCTGAGTTCATAGCAACCCTTCTCTTCCTCTATATCACTGTCCTCACCATAATTGGCAACAAAAGACAGATTGATAGTGGCACCAAATACACCACAAATGTGCCCTTCTATGCTTTCAAGTTTCAACTTTTCTACATGAAAAAGCCAAAATTTGGACAACTTTTGTACATGCTCACACGAGGACACATAAACCCAGCAGTGACATTCGGGCTGTTCCTAGGACGCAAGGTGTCGTTGATAAGGGCGTTGTTGTACATTGTAGCACAATGTGCTGGTGCTATCTGTGGCACTGGACTGGCGAAGGTGTTCCAAAAGGCGTACTACAACAGGTACGGAGGTGGTGCTAACTTTGTTGCTGATGGCTGCAACAGGGGCACTGCTTTGGGTGCTGAGATTATCGGTACCTTCGTTCTTGTCTACACTGTCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGACTCCTATATTCCTGTACTAGCACCACTCCCGATTGGCTTTGCTGTTTTCGTGGTTCATTTGGCTACAATCCCAGTTACTGGCACTGGCATTAACCCAGCAAGGAGTTTTGGAGCAGCTGTAATCTACAATGACGACAAAATCTGGGATGATCAGTGGATTTTCTGGGTTGGACCAATTGTTGGAGCAGCAGGGGCTGCATTATACCACCAATACATCCTTAGAGCATCGGCTATCAAGTCTCTTGGATCATTCAGGAGCCATACTTAA 855 0.4632 MAEDVEIQEQREYPAKDYYDPPPAPFFDRRELTQWSFYRAIIAEFIATLLFLYITVLTIIGNKRQIDSGTKYTTNVPFYAFKFQLFYMKKPKFGQLLYMLTRGHINPAVTFGLFLGRKVSLIRALLYIVAQCAGAICGTGLAKVFQKAYYNRYGGGANFVADGCNRGTALGAEIIGTFVLVYTVFSATDPKRNARDSYIPVLAPLPIGFAVFVVHLATIPVTGTGINPARSFGAAVIYNDDKIWDDQWIFWVGPIVGAAGAALYHQYILRASAIKSLGSFRSHT 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01175 284 CDD MIP 39 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian5g01175 284 Gene3D Glycerol uptake facilitator protein. 24 284 IPR023271 -
Vian5g01175 284 SUPERFAMILY Aquaporin-like 30 270 IPR023271 -
Vian5g01175 284 ProSitePatterns MIP family signature. 104 112 IPR022357 -
Vian5g01175 284 Pfam Major intrinsic protein 31 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian5g01175 284 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian5g01175 284 PRINTS Major intrinsic protein family signature 123 142 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian5g01175 284 PRINTS Major intrinsic protein family signature 172 190 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian5g01175 284 PRINTS Major intrinsic protein family signature 248 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian5g01175 284 PRINTS Major intrinsic protein family signature 86 110 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian5g01175 284 PRINTS Major intrinsic protein family signature 208 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian5g01175 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 9 275 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01175 Vian-Chr5 34300464 34301889 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01175 1 282 Major Intrinsic Protein MIP AT5G60660 65.979 1.62e-137 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01175 K09872 - gmx:100811119 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00476 11 4603365 4604505 Vian5g01175 5 34300464 34301889 PCT