Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01166 ATGAAGGAGGGTGAGAAGGTATTGGATCCGCAGCTATGGCACGCGTGTGCTGGTGGCATGGTTCAGATGCCCAAGGTGAACTCCAAAGTCTTCTACTTCCCACAGGGTCATGCAGAGCACGCCCACACCAACATTGATCTCAGGGTTCCGCCACACATTCTCTGCAACGTCGAGGCGGTGAAGTTCATGGCGGACCCAGAAACCGACGAGGTTTTTGCCAAACTGAGTCTGGTCCCTCTCAGAAACTCGGAACCCGGTCCCGACGCGGAGGGGGGTGCTGACGTGGCGGAGGCTTCGGAGAAGCCCGCGTCTTTTGCGAAGACTCTGACGCAGTCGGACGCCAACAATGGTGGCGGGTTTTCGGTGCCACGGTACTGCGCGGAGACGATTTTTCCGCGGCTGGACTACTCGGCGGAGCCGCCGGTGCAAACGGTGGTGGCAAAGGACGTGCAGGGGGAGACGTGGAGGTTCCGGCACATATACCGAGGGACACCACGTCGGCACTTGCTGACGACTGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTGGTGGCTGGGGATTCTGTGGTGTTTCTGAGGTCTGAGAATGGAGAGTTGTGTGTTGGGATTCGAAGGGCAAAGAAGGGAATCGGGTTTGAGGTGTGGAACTCTGCTTCTGGTTCAGGGTCTGGAAGTATCGGTGGAAGTGGGAATTGTGGGATTGGTCCTTATGGGCCTTTCTCTTTTTTCCTGAGAGAGGAGAACAAGAGCTTAAGGAATGGTGGCGGCGGTGGTGGTGGTGGTGGGAATTTGAGTGGCAGGGCCAAAGTGAGGCCTGAGGCTGTTGTTGAAGCAGTGACCCTGGCTGCTGCTAACAAACCTTTTGAGGTTGTTTATTATCCAAGAGCCAGTACTCCTGAGTTTTGCATTAAGGCTTCTTCTGTAAGGGCTGCTATGAGGATTCAGTGGTGTTCTGGGATGAGGTTCAAGATGGCCTTTGAGACTGAGGATGCTTCCAGAATAAGCTGGTTCATGGGAACCATTGCTTCTGTTCAGGTTCTTGACCCCATTCGCTGGCCTAATTCCCCATGGAGGCTTCTTCAGGTAACTTGGGATGAGCCAGATTTACTGCAAAATGTGAAGCGTGTTAGCCCGTGGTTGGTTGAACTGGTGTCAAACTTGCCAGTGATAAATTTCACACCTTTCTCTCCACCAAGAAAGAAGCTGCGGTTTCCGCAGCACCCGGAGTTCCCCCTTGATGTTCAATTTCCAATACCACCGTTTTCAGGCAACCAGCTCGGGCCTAACCACCCCTTGTGTGGTTTTTCAGATAACGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAACATCACTATCAGATCTCCACCTTAACAGTAAACTGCAGTTGGGGTTGCTTCCATCTAATATCCAGCAACATGGACTGTATAGTGGGATTTCAAGTGGTAACACGACCAACCATGATAAGAGCAAAGAAAGCTTATCACACTTGCTGACCATTGGGAAATCTAGCAAGACTTTGGAGAAATCTGATGATGTTAAGAAACATCAGTTTTTGCTCTTTGGTCAACCAATACTCACCGAGCAACAGATTTCTGGAGACTTGTTGTCCCGTGGGAAAAAATCACCGGATGATGTCAAAGACAAGGAGAAGTGCTTTGTGGATGACTCCCAATCTGCACTCTTTTCATCAGGGAAAGCTTCTGCTGCCGAGTTCTCTTGGCAACTTGGCTTGGACACTGGTCATTGTAAAGTTTTCTTGGAGTCAGAAGATGTTGGAAGGACCTTAGACCTATCAAGGCTTGGTTCTTATGAAGAACTCTATAGAAGACTTTCCTACATGTTTGGAGTTGAAAGATCTGAGATTCCAAATTACGTGTTCTACTATGATGCAAAAGGTGCTGTTAAGCAAACTGGAGAAGAACCTTTCAGTGACTTCATGAAAACAGCAAAAAGGTTGACAATTCTGACGGATTCAGGCAGCAAAAATGTTACAAGGGCCTTTATTACAGGAACTCGGAATGGTGAACATGGACTGGATGCATCAAATAAAACAGGCCCTCTGAGCATATTTGCTTAA 2088 0.4957 MKEGEKVLDPQLWHACAGGMVQMPKVNSKVFYFPQGHAEHAHTNIDLRVPPHILCNVEAVKFMADPETDEVFAKLSLVPLRNSEPGPDAEGGADVAEASEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVVAKDVQGETWRFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRSENGELCVGIRRAKKGIGFEVWNSASGSGSGSIGGSGNCGIGPYGPFSFFLREENKSLRNGGGGGGGGGNLSGRAKVRPEAVVEAVTLAAANKPFEVVYYPRASTPEFCIKASSVRAAMRIQWCSGMRFKMAFETEDASRISWFMGTIASVQVLDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNLPVINFTPFSPPRKKLRFPQHPEFPLDVQFPIPPFSGNQLGPNHPLCGFSDNAPAGIQGARHAQIGTSLSDLHLNSKLQLGLLPSNIQQHGLYSGISSGNTTNHDKSKESLSHLLTIGKSSKTLEKSDDVKKHQFLLFGQPILTEQQISGDLLSRGKKSPDDVKDKEKCFVDDSQSALFSSGKASAAEFSWQLGLDTGHCKVFLESEDVGRTLDLSRLGSYEELYRRLSYMFGVERSEIPNYVFYYDAKGAVKQTGEEPFSDFMKTAKRLTILTDSGSKNVTRAFITGTRNGEHGLDASNKTGPLSIFA 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01166 695 ProSiteProfiles PB1 domain profile. 583 663 IPR000270 GO:0005515
Vian5g01166 695 Gene3D - 103 207 IPR015300 -
Vian5g01166 695 SUPERFAMILY DNA-binding pseudobarrel domain 100 206 IPR015300 -
Vian5g01166 695 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 664 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vian5g01166 695 Gene3D - 582 668 - -
Vian5g01166 695 Pfam Auxin response factor 278 361 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vian5g01166 695 Gene3D - 316 388 - -
Vian5g01166 695 FunFam Auxin response factor 316 389 - -
Vian5g01166 695 CDD B3_DNA 104 205 IPR003340 GO:0003677
Vian5g01166 695 ProSiteProfiles B3 DNA-binding domain profile. 105 207 IPR003340 GO:0003677
Vian5g01166 695 Pfam B3 DNA binding domain 105 206 IPR003340 GO:0003677
Vian5g01166 695 SMART B3_2 105 207 IPR003340 GO:0003677
Vian5g01166 695 FunFam Auxin response factor 103 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01166 Vian-Chr5 34138652 34141492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01166 1 668 B3 DNA Binding Superfamily AT4G30080 57.471 0.0 713
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vian5g01166 B3 1.1e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01166 - - gmx:100814686 1172.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00483 11 4701603 4704422 Vian5g01166 5 34138652 34141492 PCT