Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vian5g01165 | ATGGATGGTTTGTTTTCTAATGTTTGTTTTGGAGGTCTTGCAAGCATGAAGGACTGGTTGTTTTTCGACAAGAATTTTAATGGTTTGTCGGACAACCTACTCGATGATGTCATGGACATCGAGTTTTTCGATTTCCCCTTTGAAGACGTGGAAACTGATGATGGTGCGGAGCAAGATTGGAATGCTCAGTTCAAATTCCTTGAAGAGCCTTCACTGGGAATTTTTCCTGGACAATCGTCTCAACTCTGTGCTCATACTCAAAATGAGAATGTGAAAGTCGAAACGAGTTTCTATGCTTCTACAGCGAAGACGGCAGGTCCTAAATATAGCAAAAATGTTCCTATCCAGAAAGTCTCTTTCACTGCAAAAGATTTGCACCAATTCCAAACTAACAGCCCAGTTTCTGTTTTTGAAAACAGTAGTAGTAGTTCTTCGGTTGAGAACTCTAACTTGGAGTTACCTGCTATCCCAACAAAGCGTCCCCGAAGCAAACGCAGGCCTCTCTCAAACATCACCCTACTATACTCCATTCCTTTCATCTTTACTTCACCAGTTTTTCAAAAATCAGAATTTGAAGCACAACCATTTGGGAAATTTTCAAGCGTGATAAAAAAGCAGAGGAAAAAGAACATTCCCATGGTAGGTAACAAAATTGAGATGAAGAAATCCTCATCAGAGGAATCAGTTGGTATCAGAAAATGCATGCACTGTGAGGTGACAAAGACACCACAATGGAGAGAGGGACCAATGGGTCCAAAGACCCTATGCAACGCTTGTGGAGTTCGGTACCGCTCTGGCAGGCTCTTTGCTGAATACCGTCCTGCAGCTAGCCCCACTTTTGTAGCATCATTGCACTCTAACTCTCACAAGAAGGTCTTAGAAATTAGAAACAGAGACACCCATGTGACAGTTAAATGA | 918 | 0.4205 | MDGLFSNVCFGGLASMKDWLFFDKNFNGLSDNLLDDVMDIEFFDFPFEDVETDDGAEQDWNAQFKFLEEPSLGIFPGQSSQLCAHTQNENVKVETSFYASTAKTAGPKYSKNVPIQKVSFTAKDLHQFQTNSPVSVFENSSSSSSVENSNLELPAIPTKRPRSKRRPLSNITLLYSIPFIFTSPVFQKSEFEAQPFGKFSSVIKKQRKKNIPMVGNKIEMKKSSSEESVGIRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFAEYRPAASPTFVASLHSNSHKKVLEIRNRDTHVTVK | 305 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vian5g01165 | 305 | ProSitePatterns | GATA-type zinc finger domain. | 234 | 259 | IPR000679 | GO:0006355|GO:0043565 | |
Vian5g01165 | 305 | CDD | ZnF_GATA | 233 | 280 | IPR000679 | GO:0006355|GO:0043565 | |
Vian5g01165 | 305 | MobiDBLite | consensus disorder prediction | 139 | 163 | - | - | |
Vian5g01165 | 305 | PANTHER | GATA TRANSCRIPTION FACTOR | 51 | 298 | - | - | |
Vian5g01165 | 305 | ProSiteProfiles | GATA-type zinc finger domain profile. | 232 | 264 | IPR000679 | GO:0006355|GO:0043565 | |
Vian5g01165 | 305 | FunFam | GATA transcription factor | 222 | 305 | - | - | |
Vian5g01165 | 305 | Gene3D | - | 231 | 278 | IPR013088 | GO:0006355|GO:0008270 | |
Vian5g01165 | 305 | SMART | GATA_3 | 228 | 278 | IPR000679 | GO:0006355|GO:0043565 | |
Vian5g01165 | 305 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 232 | 290 | - | - | |
Vian5g01165 | 305 | Pfam | GATA zinc finger | 234 | 267 | IPR000679 | GO:0006355|GO:0043565 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vian5g01165 | Vian-Chr5 | 34110853 | 34116556 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vian5g01165 | 23 | 299 | C2C2-Gata Transcription Factor Family | AT1G08010 | 39.189 | 6.39e-59 | 189 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-GATA | Vian5g01165 | GATA | 3.4e-16 | CL0167 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vian5g01165 | - | - | gmx:100815208 | 377.481 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vian5g01165 | 5 | 34110853 | 34116556 | Vian5g01165 | 5 | 34110853 | 34116556 | ECH |