Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01165 ATGGATGGTTTGTTTTCTAATGTTTGTTTTGGAGGTCTTGCAAGCATGAAGGACTGGTTGTTTTTCGACAAGAATTTTAATGGTTTGTCGGACAACCTACTCGATGATGTCATGGACATCGAGTTTTTCGATTTCCCCTTTGAAGACGTGGAAACTGATGATGGTGCGGAGCAAGATTGGAATGCTCAGTTCAAATTCCTTGAAGAGCCTTCACTGGGAATTTTTCCTGGACAATCGTCTCAACTCTGTGCTCATACTCAAAATGAGAATGTGAAAGTCGAAACGAGTTTCTATGCTTCTACAGCGAAGACGGCAGGTCCTAAATATAGCAAAAATGTTCCTATCCAGAAAGTCTCTTTCACTGCAAAAGATTTGCACCAATTCCAAACTAACAGCCCAGTTTCTGTTTTTGAAAACAGTAGTAGTAGTTCTTCGGTTGAGAACTCTAACTTGGAGTTACCTGCTATCCCAACAAAGCGTCCCCGAAGCAAACGCAGGCCTCTCTCAAACATCACCCTACTATACTCCATTCCTTTCATCTTTACTTCACCAGTTTTTCAAAAATCAGAATTTGAAGCACAACCATTTGGGAAATTTTCAAGCGTGATAAAAAAGCAGAGGAAAAAGAACATTCCCATGGTAGGTAACAAAATTGAGATGAAGAAATCCTCATCAGAGGAATCAGTTGGTATCAGAAAATGCATGCACTGTGAGGTGACAAAGACACCACAATGGAGAGAGGGACCAATGGGTCCAAAGACCCTATGCAACGCTTGTGGAGTTCGGTACCGCTCTGGCAGGCTCTTTGCTGAATACCGTCCTGCAGCTAGCCCCACTTTTGTAGCATCATTGCACTCTAACTCTCACAAGAAGGTCTTAGAAATTAGAAACAGAGACACCCATGTGACAGTTAAATGA 918 0.4205 MDGLFSNVCFGGLASMKDWLFFDKNFNGLSDNLLDDVMDIEFFDFPFEDVETDDGAEQDWNAQFKFLEEPSLGIFPGQSSQLCAHTQNENVKVETSFYASTAKTAGPKYSKNVPIQKVSFTAKDLHQFQTNSPVSVFENSSSSSSVENSNLELPAIPTKRPRSKRRPLSNITLLYSIPFIFTSPVFQKSEFEAQPFGKFSSVIKKQRKKNIPMVGNKIEMKKSSSEESVGIRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFAEYRPAASPTFVASLHSNSHKKVLEIRNRDTHVTVK 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01165 305 ProSitePatterns GATA-type zinc finger domain. 234 259 IPR000679 GO:0006355|GO:0043565
Vian5g01165 305 CDD ZnF_GATA 233 280 IPR000679 GO:0006355|GO:0043565
Vian5g01165 305 MobiDBLite consensus disorder prediction 139 163 - -
Vian5g01165 305 PANTHER GATA TRANSCRIPTION FACTOR 51 298 - -
Vian5g01165 305 ProSiteProfiles GATA-type zinc finger domain profile. 232 264 IPR000679 GO:0006355|GO:0043565
Vian5g01165 305 FunFam GATA transcription factor 222 305 - -
Vian5g01165 305 Gene3D - 231 278 IPR013088 GO:0006355|GO:0008270
Vian5g01165 305 SMART GATA_3 228 278 IPR000679 GO:0006355|GO:0043565
Vian5g01165 305 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 232 290 - -
Vian5g01165 305 Pfam GATA zinc finger 234 267 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01165 Vian-Chr5 34110853 34116556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01165 23 299 C2C2-Gata Transcription Factor Family AT1G08010 39.189 6.39e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vian5g01165 GATA 3.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01165 - - gmx:100815208 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01165 5 34110853 34116556 Vian5g01165 5 34110853 34116556 ECH