Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01161 ATGGACGAGAGAATGCTTGACGCAATATGCGAGAGGCTGAAGCCGGCGCTGTGCACGGAGAACACGTACCTAGTTCGCGAGGGCGATCCCGTGAACGAAACTCTCTTCATAATCAGGGGCCACCTCGATTCTTACACCACCAACGGAGGCCGCACCGGTTTCTTCAACTCGTGCCGCATCGGGCCCGGCGATTTCTGCGGCGAGGAGCTGCTGACATGGGCCCTGGGCCCACGGCCCAGCTTCATCCTGCCGTCCTCCACTCGAACCGTGAAGGCCATCTCCGAAGTGGAGGCCTTCGCCCTCATAGCGGAAGACCTAAAGTTCGTGGCGTCACAGTTCAGAAGACTACACAGCAAACAACTGAGACACAAGTTCAGGTTTTACTCGCACCAGTGGAGAACGTGGGCTGCGTGTTTCATACAAGCTGCATGGAGACGGTATAAGAAGCGAAAGGAAGCAGCAGAAGTGAGAGATTTGAGCTACTACGTTGAGTCGAAGAGTGACAGTGAGACAGTAGGGTTGGTTGCGTATGGTACGAGGATGACTAGGAAGGGTTCTGTGCATTCTGATGAAGTTGTCAACGCTTTGCAGAAGCCAGAAGAACCAGATTTTTCTCTTGGTGAGTGA 627 0.5407 MDERMLDAICERLKPALCTENTYLVREGDPVNETLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALGPRPSFILPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRYKKRKEAAEVRDLSYYVESKSDSETVGLVAYGTRMTRKGSVHSDEVVNALQKPEEPDFSLGE 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01161 208 CDD CAP_ED 1 128 IPR000595 -
Vian5g01161 208 SMART cnmp_10 1 128 IPR000595 -
Vian5g01161 208 Gene3D Jelly Rolls 1 115 IPR014710 -
Vian5g01161 208 SUPERFAMILY cAMP-binding domain-like 1 115 IPR018490 -
Vian5g01161 208 ProSiteProfiles cAMP/cGMP binding motif profile. 1 94 IPR000595 -
Vian5g01161 208 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 204 - -
Vian5g01161 208 FunFam Cyclic nucleotide-gated ion channel 1 1 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01161 Vian-Chr5 34068500 34069195 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01161 1 205 Ion Channels AT2G28260 75.610 3.98e-104 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01161 K05391 - gmx:100791992 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00490 11 4778987 4779950 Vian5g01161 5 34068500 34069195 PCT