Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01155 ATGGGAAGTCTTGTACTTGTCCACAAAATTATGCTTTATCTGCGGTTTGTTGCTTGGATTTGCTTAGGTCTGTGCTCTGCTTACAACCAAAACAATTGTACTTCAAATGAAATTGGGCTAGGAACAAGGTACAGCTGCAAGTCAACGCAGGATTCATGCGAAACATTCGTGGTGTATAGAGCTAACAAAAATTTCAACACCATTTCTAGTGTCTCAAAGCTCTTCAACAAGAGCTCTGATGAGGTGCTTCTAAAGAACAACCTCGTATCTTCCTCTTTGTCCCTTGTACTCAGACAAGGTAAGGAGGTGCTTATTCCTGTTAATTGTACCTGCTCTGGAACGTATTATCAAACCAGTTTAAGCTATAGAGTCCTTGACAACACAACTTTTTCCGAGGTTGCTTGTGGTGTTTTTGAAGGGCTGCTAAGTCGTCTCACACTGGCTGAGGAAAACCTCTCACAAGGTAATGAACCAGAAGCTGGTTCTGAGCTTCATGTACCTCTCATGTGTGTTTGTCCTGACAGTGAGAATTCCACCTGGAGCAAGAAGGTGAAGTACCTTGTCACGTACCCTCTTATAGCAGAAGATGATCCTGACAAAGTGAGTCAAAAATTTCAAATCTCACCAGGAGAGTTTTATGCAGTCAATAACTTGAATTCCATGTCAACTGTTTATCCTAACACAGTTGTTCTAGTTCCATTAGAGGATGGTCCAATCAGAATACTTGATCTTCCTGACTCTCCTTCTCCACCTCCAGGTTTTCTTCCTACAAATCCAGTGAACAAGTCACAACAATACATAAAACCATCCCATTTGTACATTGCAGGGTGTGTTATCGGATTTTTGCTGCTCATAACATTGCTTGCTAGTGGATTTTACATAAAGAGATTGAGAAAAATTGAAGTTGTTCATTCCTTCAGTCCGACCAACTCCCTCACTTTGTGGTCGCCAACTAGAAGCTCTCAGATATCCACTCAAACGGGTAAAAGCAATACAACTTGGTGCCTGTCCCCGGATCTTCTTGTTGGAATAAAGTACTACTTACTCAATTACACCATAGAGGAGCTCCAGAAGGGAACCAAGAATTTCAGTCAAGAAAACAACATCAGTAGCGAAGGTGACTTTGTATATAAGGGCAGAGTCAATGATGTTGAGGTGATGGTGAAGAGGATGAGGTTGGAAGATACACGAAAGGTGATTGATTTACATTCTAAGATCAACCACATTAATATTGTGAACTTGCTTGGTGTTTGTTATGGTGAGAGCAATGATTCATGGTCTTATTTAGTGTTTGAGTTGCCTAAGAATGGATGCTTGAGGGACTGCTTATCTGATCGATGCAATCCTCTAAACTGGTACAAAAGGACACAAATTGCCTTTGATATTGCGACATGTCTCTACTATTTACATTGCTGTTCTTTTCCTTCCTATGCTCACATGAATGTCAGTAGCAGAAACATATTCATAACAGCTGACTGTAGGGGTAAACTGGCAGATGTTGGAAGGGCATTGGCTGCCAGTGCCACACTCAGCAAAAGCAATAATGGTGTCGAGATTCCCAAAGGATTGGTGGCACCAGAGTTCCTCTCGCATGGGTCAGTTTCTGAAAAAGTTGACATTTTTGCATTTGGGGTTGTATTGCTTGAGCTGATCTCAGGAAGGGAGAATTTTGATGGAAAAGCAATGAAAGATTCCCTGGGATTCTTGTTGGGGGAGGCCAGTGAAGGTGGTTGTTTTGAAGGGTTATGGAGTTTCATGGATCCTAATCTGAAGGATTACTCTCTTCCAGAGGCTTTATGTTTATCTTTTCTGGCAAAGGATTGTGTGGCAGATGATCCTCTGCATAGGCCAAGTATGGATGATATCATGAAAGTCCTTGCAAAAATGGTTTAG 1893 0.4157 MGSLVLVHKIMLYLRFVAWICLGLCSAYNQNNCTSNEIGLGTRYSCKSTQDSCETFVVYRANKNFNTISSVSKLFNKSSDEVLLKNNLVSSSLSLVLRQGKEVLIPVNCTCSGTYYQTSLSYRVLDNTTFSEVACGVFEGLLSRLTLAEENLSQGNEPEAGSELHVPLMCVCPDSENSTWSKKVKYLVTYPLIAEDDPDKVSQKFQISPGEFYAVNNLNSMSTVYPNTVVLVPLEDGPIRILDLPDSPSPPPGFLPTNPVNKSQQYIKPSHLYIAGCVIGFLLLITLLASGFYIKRLRKIEVVHSFSPTNSLTLWSPTRSSQISTQTGKSNTTWCLSPDLLVGIKYYLLNYTIEELQKGTKNFSQENNISSEGDFVYKGRVNDVEVMVKRMRLEDTRKVIDLHSKINHINIVNLLGVCYGESNDSWSYLVFELPKNGCLRDCLSDRCNPLNWYKRTQIAFDIATCLYYLHCCSFPSYAHMNVSSRNIFITADCRGKLADVGRALAASATLSKSNNGVEIPKGLVAPEFLSHGSVSEKVDIFAFGVVLLELISGRENFDGKAMKDSLGFLLGEASEGGCFEGLWSFMDPNLKDYSLPEALCLSFLAKDCVADDPLHRPSMDDIMKVLAKMV 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01155 630 SUPERFAMILY Protein kinase-like (PK-like) 347 626 IPR011009 -
Vian5g01155 630 Pfam Protein tyrosine and serine/threonine kinase 382 564 IPR001245 GO:0004672|GO:0006468
Vian5g01155 630 Gene3D Phosphorylase Kinase; domain 1 344 432 - -
Vian5g01155 630 ProSiteProfiles Protein kinase domain profile. 350 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g01155 630 ProSiteProfiles LysM domain profile. 188 232 IPR018392 -
Vian5g01155 630 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 26 629 - -
Vian5g01155 630 Gene3D Transferase(Phosphotransferase) domain 1 435 630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01155 Vian-Chr5 33772563 33774455 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01155 44 630 Receptor kinase-like Gene Family AT2G23770 29.816 6.59e-66 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vian5g01155 PK_Tyr_Ser-Thr 4.6e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01155 - - gmx:100818937 999.193