Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01152 ATGAGCAGCTTAAGGCCTGAACTGCATGTTGCCCAACAACTTCGGCGGGACAAATTGAGGATTCAAAACAGTTCCCAACATTTGCAAGAGTTCCCAAGCAACCTAGAACAGTTATCGTTACACCCAGGTTTCAACTTGGATCTTCTTCAAGTGAGAAATGTTCGAAATGGAAACATGCTTGACGAGGCCCTTTATTCATCGGATATGATATCTTTTTCCACTGCTTCGAATCCTTTGTCCACTCCAAGAAACCCGTTGGAGTGTCAAGAACTGATGATGGCTCAGTATGGTTCCACTTCGTTTCCTCATTCATCGTCCCCGAAGGACCAACAATGTGAACCACGCCACTTGGGAGCTAATTGGATGGTGAATTATAACGAAAGCAACCCCAACACCAACAATACCACCTTCTTCTCTTCTGAGCTTAATAACAATGCTTCTGGTGAAATAGCCAATAGAGAAATTCAGAAGCAGTTCGGTGAAATGCATTACCCTCCTTCTTCGTCTTCGTCGCCTCCTCTTTACCATAATGCTTTGCAGGACATGTCTTACGGCGTTTGGGGAGGAAACCATGCTGAGCCTGTGCTTCATTATCAAGCAAACAACGAGTTACGTTTTGGGGGTGCTAATTTATGGACAAATAGTAGCAGCGCGATGGGTTTCAAGAAGAATAATGAACAAGACATAAATCCTCATCAGGGTTTATCACTGTCACTTTCCTCGAACTCACAATCTAAGCCTTGTTTTGAAGAAGGGTCTGCATCGGATGACCCTACTCAATATTCAATGTCATTGAAGTCCTCCATGAAGTTGAACGTTCTTTCAAACAATACTGTTTATCGAAATGTTGGCCCTCTCGGTCCCTTCACCGGGTACGCCACGATTTTGAAGAGTTCAAGATTCTTGAAGCCGTGTCAACAGCTGTTAGATGAGTGGTGCTGTCAATACGGTTCAAAGTCTGCGAAAGGAGGGGGTTGTGACGTTCCAGAGTGGGTCTCTCGAGATGTCAGTGCTGCCTCTATTTCTGCAGCTGCAACTGCTGGTGATGCTCTTAATGTTGATGAAAGTGGGGGTGCTGCAAAAGGTGTTAGCTATCTGGGTGCTTCATCCTCTGTGTTGTATAGTTCAAATGAAAATGATAATACAAATAGCGCTGATGGCGGAGCCACGAGTAACTTTTGTCTTTCTTCTCGGCCAGAGTGCCAAAAGAACAAGGCAAAACTACTGTACATGCAAGAGGAGGACTCTGCCTATGCAAGAACAGTGTTGCTAGATAACCTTTCACCTGTGCACATTCCGCTTTCCGAAAGTTCTTTGTTTCTTCCACAATTCCTAAACAAAGTGTTTGAGGTGTTATCCTACCCGGTTGCTATTGTTCAAATCGGAGGGTTATTAGTGGTTACTAGGAGATACAAGCAATACCATCAACAGATGCAAATGGTTGTTCAATCGTTCGAGTCTGTTGCTGGTCTTAGTTCTGCAACTCCTTATGTCTCCTTGGCTCTCAAGTCAGTATCGAAACACTTCAGATGCTTAAAAGGTGCTATCTCTGATCAACTGAAGCTTACATGTGAAGTCTTGGGAGAGGAATTTTCAATGCCAACTACAAGTAATGGTGGTAAATTTGACAGTAACATGGCAAGGCTAAGGTGCATGGATCAAAGTTTTCAGAAAAACAAATCTTTGGGGGCTAACATAAACTTTCTTGAGCCCCAACAGCACGTGTGGAGACCCCAGAGAGGCTTACCAGAAAGATCAGTGGCAATTCTTAAAGCTTGGCTGTTTGAGCATTTTCTTCATCCGTACCCCACGGACACTGATAAACACATGTTGGCTACCCAAACAGGTCTTTCAAGAAACCAGGTATCAAATTGGTTCATAAATGCTCGAGTGCGTGTGTGGAAGCCAATGGTTGAGGAAATACACATGCTCGAAACAAAGGGTGCAACAGAAGCCCACCAAGCCTCTAATAAAAGTGAGCAGGTAGCTTCTGCATCTGAAGGAAGCAACCAGCCCAAATCAGATCACCAACCTGTGAGCAGGTATGGCACGCATGCATCATCCTCAGCAGGCAATGAGGAACACATCGGGATGAATGAAGACCAATGGAATCAAGAGAAGAGGTCAAAACTGGAATGCCAGATTGCTGCCACACCAAACATGGATGGAACAGTGATGGGGTTTATGCCCTACAGAAGAGGTGGACTTGAGGTTGGTGGTCTTGGATCTGTGTCACTCACTTTGGGTCTTAGGCATAGTGTTGAAGGTGTGCAACAGCAACAACTGCAACAACAGGAGGAGCTTAGGCGTCAGTTTGGAGGGCACATGATCCATGACTTTGTGGGCTAG 2349 0.4491 MSSLRPELHVAQQLRRDKLRIQNSSQHLQEFPSNLEQLSLHPGFNLDLLQVRNVRNGNMLDEALYSSDMISFSTASNPLSTPRNPLECQELMMAQYGSTSFPHSSSPKDQQCEPRHLGANWMVNYNESNPNTNNTTFFSSELNNNASGEIANREIQKQFGEMHYPPSSSSSPPLYHNALQDMSYGVWGGNHAEPVLHYQANNELRFGGANLWTNSSSAMGFKKNNEQDINPHQGLSLSLSSNSQSKPCFEEGSASDDPTQYSMSLKSSMKLNVLSNNTVYRNVGPLGPFTGYATILKSSRFLKPCQQLLDEWCCQYGSKSAKGGGCDVPEWVSRDVSAASISAAATAGDALNVDESGGAAKGVSYLGASSSVLYSSNENDNTNSADGGATSNFCLSSRPECQKNKAKLLYMQEEDSAYARTVLLDNLSPVHIPLSESSLFLPQFLNKVFEVLSYPVAIVQIGGLLVVTRRYKQYHQQMQMVVQSFESVAGLSSATPYVSLALKSVSKHFRCLKGAISDQLKLTCEVLGEEFSMPTTSNGGKFDSNMARLRCMDQSFQKNKSLGANINFLEPQQHVWRPQRGLPERSVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGATEAHQASNKSEQVASASEGSNQPKSDHQPVSRYGTHASSSAGNEEHIGMNEDQWNQEKRSKLECQIAATPNMDGTVMGFMPYRRGGLEVGGLGSVSLTLGLRHSVEGVQQQQLQQQEELRRQFGGHMIHDFVG 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01152 782 ProSiteProfiles 'Homeobox' domain profile. 573 636 IPR001356 GO:0003677
Vian5g01152 782 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 172 662 - -
Vian5g01152 782 MobiDBLite consensus disorder prediction 648 694 - -
Vian5g01152 782 SUPERFAMILY Homeodomain-like 578 642 IPR009057 -
Vian5g01152 782 CDD homeodomain 576 637 IPR001356 GO:0003677
Vian5g01152 782 Pfam Associated with HOX 295 517 IPR006563 -
Vian5g01152 782 Pfam Homeobox KN domain 593 632 IPR008422 GO:0003677|GO:0006355
Vian5g01152 782 SMART prehox3 290 518 IPR006563 -
Vian5g01152 782 Gene3D - 579 641 - -
Vian5g01152 782 FunFam BEL1-like homeodomain protein 9 579 641 - -
Vian5g01152 782 SMART HOX_1 576 640 IPR001356 GO:0003677
Vian5g01152 782 MobiDBLite consensus disorder prediction 650 694 - -
Vian5g01152 782 MobiDBLite consensus disorder prediction 222 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01152 Vian-Chr5 33745557 33750771 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01152 467 753 Homeobox Transcription Factor Family AT4G34610 44.828 4.16e-62 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vian5g01152 POX 6.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01152 - - vum:124831694 1344.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00499 11 4906965 4912381 Vian5g01152 5 33745557 33750771 PCT