Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01149 ATGACTTCTACAACCCCAGTTTCTCTAAAAGGCAGCAACACAAAGCTACCACCTCTAAGGGCAAAGAAGGATCGGCACACGAAGGTGAATGGCAGAGAAAGGCGTGTTCTTCTGCCACCTTTGTGTGCTGCTCGTATCTTCCAACTCACTTGTGAGCTAGGTTACAAGACTCACGGAGAAACCATAGGCTGGCTTCTGCGCCAGGCTGAACCCTCCATTATTTCTGCCACTGGGACTGGTATATCACCTTCCATTGTTGATTTAACGTCATCTTCATCATCACCATCGACGTCTTCTTCGTCACTACCGATACTTCCACTGCCTTCTCAGGACAACAACAACGTTGTTGTTGGTCAACATGCAAATTCGGTTCACGTTTCAATAGACAATGAGATCAATTCTAAAGAGACATTTCTGCCATTGGATTTTGATGTGTTTTCAAACTTTAATGTCGAGTTTTCTGCTGGTGAGATCGAAATGCTCCAGTCATTGATGACTAGCTTCATTGTGGGGCCAAAGCTAGTTTTTGGTCAGAGTAGTGACGGAGAAGGAGGTGGTGGCGGTGGCGGTGGCGCTCTTGAAATATTAGCCCAAGATGTATATAGTGGCATGGCCAATTATACATCTGTGTTCAAGAAAGTAATAAAACAACAGTTGGGTTATTGCGTAGTTGATGTGGACGCTGATTGGAATGGGGCATTCAATTTCAGCAAAGATCTTACCTTTTTGACCATCTGTGCCCAGCAAATGAGAGGAGATATTACACAACGCATGTGCACAGAAGCAGAAATACTAGCTTATGGCCAAAGTTTTGCTGGTGGGAAGTCAAGATCCAACTTCTTGAAGCCCAACATAAATTGTAATTTGACCTCATGGGTTAATGGTTGTGAACCCGGATGGGGGTGTAAAGCTAATCAAAAAGTAGACATTGACAGTACCAAGAAAGATATCCCTGTTAGATCTTTAGATTGCCTACCTTGTTGTGAAGGGTTCTTTTGCCCTCGTGGTCTCACTTGCATGATACCTTGCCCATTGGGGTCTTATTGTCCTCTTGGACAACTCAATAAGACTAGTGGAGTATGTCAACCATATCGTTATCAGCTACCTCCTGGAAAGCCTAACCATACTTGTGGTGGGGCAGATATCTGGGCAGATATTGCGAGTAGCAGTGAGGCTGGCTTGTGTTTTTTGCTTATTATCATATACAATTGTTCTGATCAAGTTCTTGCAACTCGAGAAAGAAGACAAGCAAGTACACGAGAGAGGGCTGTTCAAAGTGTGAGAGAAACCCAAGCCCGTGAAAAATGGAAATCTGCGAAAGATATTGCTAAAAAGCATGCAGTGGGACTACAATCGCAACTATCACGTACATTTTCACGCAAAACTTCAAAGAAGCCAGAGTTGAAAGGTTTTGGTTCTAAACATTCAGATTCTGCTATTCCACCTGCTGGTAAAGGCAAGAAAAAGGATAAAAACAATCTCTCAAAAATACTAAATGATATTGAGCAAAACCCCGATAATCCAGAGGGGTTTAATGTTGAGATAGGAGATAAAAATGTGAAAAAGCAAGCACCAAGGGGCAAACAATTACATACTCAAAGTCAAATTTTCAAGTATGCATATGGTCAGATTGAAAAAGAAAAGGCTTTAGCTGAACAAAACAAAAACTTAACCTTTTCTGGAGTAATTTCAATGGCTAGTGATATTGAGATCAGGAAGAGACCTACTATTGAAGTTGCTTTTAAAGATTTAACCCTCACTTTGAAAGGGAAAAACAAACATTTATTGAGATGTGTAACCGGTAAACTTTATCCTGGTAGAGTTTCAGCTGTCATGGGCCCATCCGGGGCTGGCAAAACAACATTTCTTTCTGCTTTAACTGGAAAAGCAACTGGATGTCACACGACTGGGCAAGTTCATGTAAATGGTCAGGAATCTTCTATCAGGTCATACAAGAAAATCATTGGGTTTGTGCCACAAGATGATATTGTGCATGGAAATTTGACAGTGGAGGAGAATTTATGGTTCAGTGCTAGATGCAGACTCCCTGCCGATCTACCAAAAGAAGAAAAGGTGTTAGTGGTTGAAAGAGTCATCGAGTCATTAGGTCTACAGGCAATACGAGATTCTTTAGTCGGAACAGTGGAGAAACGAGGAATCTCTGGAGGTCAAAGGAAAAGAGTAAACGTTGGATTGGAAATGGTCATGGAACCTTCCCTTCTAATTTTGGATGAACCCACATCTGGTTTGGATAGCTCATCTTCTCAATTACTTCTAAGAGCACTTAGACGTGAAGCTCTTGAAGGTGTAAACATATGTATGGTCCTTCACCAACCGAGTTACACCTTGTTCAAGATGTTTGACGATTTTATACTACTTGCAAAAGGAGGTCTTACAGTGTATCATGGACCAGTGAACAAAGTGGAAGAGTATTTCTCAAGCATGGGAATCAATGTCCCTGACCGTGTCAACCCTCCAGATTACTTCATTGACATTTTAGAAGGAATAGTAAAATTAAGCCCAAGCTTAGGAGTGACCTATAAACAACTACCTGTGAGATGGATGCTTCATAATGGGTACCCCGTGCCCATGGATATGCTACAGAGTGTTGAAGGAATGTCCGCCCCAAGTGGTGAAGGCTCATCAAGTGGAGCAGCAACTGGTGGAGAAGAAGAAGCACCTTCTTTTGCTGGAGAACTTTGGCAGGATGTAAAGTGCAATGTTGAGATGAAGAAGGATATCCTTCACATTAACTTCTTAGCTTCACATGATCTGTCCAATCGGGTTACACCAGGAGTGTTCAACCAATACAAGTACTTTCTTGGAAGAGTGGGTAAGCAAAGACTAAGAGAAGCTAGAACACAGGCTGTGGATTTCTTGATTTTGCTACTAGCTGGCCTTTGCTTAGGTACACTTGCCAAAGTGAGTGATGAATCATTTGGAGCAACTGGTTACACATACACTGTGATAGCAGTATCTTATCTACTTTGTAAGGTAACTGATGCTTTACTTGCAGCACTCCTTTCTAAGATTGCGGCTTTGAGATCATTCTCATTGGATAAGTTGCACTATTGGCGGGAAAGCTCTTCAGGCATGAGCAGTTTGGCTTACTTTCTATCAAAGGATACTGTTGACCATTTTAGCACAGTTATCAAGCCACTAGTTTACCTTTCTATGTTCTATTTCTTCAACAATCCAAGATCATCAGTCATAGATAACTATTTTGTTCTACTATGTTTAGTCTATTGTGTCACTGGCATAGCTTATGTGTTAGCAATCTTCTTACAGCCAGGTCCAGCCCAACTGTGGTCAGCCTTACTTCCAGTAGTTTTGACTCTTGTAGCAACCTATCAAAACGAAGATGATAGCAAATATGTTAAATATCTGTCAGATTTGTGCTACACCAAGTGGGCTCTTGAAGCATTTGTGATATCAAATGCTAAAAGATATGCTGGAGTTTGGTTAATAAGTCGATGTGGAGCTCTTTATTCTTCTGGGTATGATCTTAAACATTGGTATCAATGCTTAGGCCTTCTTATCGTGATGGGAATAATTAGTCGCATGCTGGCATTTTTCTGCATGATAACCTTCCAAAAGAAATAA 3603 0.4135 MTSTTPVSLKGSNTKLPPLRAKKDRHTKVNGRERRVLLPPLCAARIFQLTCELGYKTHGETIGWLLRQAEPSIISATGTGISPSIVDLTSSSSSPSTSSSSLPILPLPSQDNNNVVVGQHANSVHVSIDNEINSKETFLPLDFDVFSNFNVEFSAGEIEMLQSLMTSFIVGPKLVFGQSSDGEGGGGGGGGALEILAQDVYSGMANYTSVFKKVIKQQLGYCVVDVDADWNGAFNFSKDLTFLTICAQQMRGDITQRMCTEAEILAYGQSFAGGKSRSNFLKPNINCNLTSWVNGCEPGWGCKANQKVDIDSTKKDIPVRSLDCLPCCEGFFCPRGLTCMIPCPLGSYCPLGQLNKTSGVCQPYRYQLPPGKPNHTCGGADIWADIASSSEAGLCFLLIIIYNCSDQVLATRERRQASTRERAVQSVRETQAREKWKSAKDIAKKHAVGLQSQLSRTFSRKTSKKPELKGFGSKHSDSAIPPAGKGKKKDKNNLSKILNDIEQNPDNPEGFNVEIGDKNVKKQAPRGKQLHTQSQIFKYAYGQIEKEKALAEQNKNLTFSGVISMASDIEIRKRPTIEVAFKDLTLTLKGKNKHLLRCVTGKLYPGRVSAVMGPSGAGKTTFLSALTGKATGCHTTGQVHVNGQESSIRSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRLPADLPKEEKVLVVERVIESLGLQAIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVLHQPSYTLFKMFDDFILLAKGGLTVYHGPVNKVEEYFSSMGINVPDRVNPPDYFIDILEGIVKLSPSLGVTYKQLPVRWMLHNGYPVPMDMLQSVEGMSAPSGEGSSSGAATGGEEEAPSFAGELWQDVKCNVEMKKDILHINFLASHDLSNRVTPGVFNQYKYFLGRVGKQRLREARTQAVDFLILLLAGLCLGTLAKVSDESFGATGYTYTVIAVSYLLCKVTDALLAALLSKIAALRSFSLDKLHYWRESSSGMSSLAYFLSKDTVDHFSTVIKPLVYLSMFYFFNNPRSSVIDNYFVLLCLVYCVTGIAYVLAIFLQPGPAQLWSALLPVVLTLVATYQNEDDSKYVKYLSDLCYTKWALEAFVISNAKRYAGVWLISRCGALYSSGYDLKHWYQCLGLLIVMGIISRMLAFFCMITFQKK 1200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01149 1200 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 538 1187 - -
Vian5g01149 1200 CDD ABCG_EPDR 577 803 - -
Vian5g01149 1200 FunFam ABC transporter G family member 24 573 815 - -
Vian5g01149 1200 MobiDBLite consensus disorder prediction 1 29 - -
Vian5g01149 1200 MobiDBLite consensus disorder prediction 871 891 - -
Vian5g01149 1200 MobiDBLite consensus disorder prediction 453 492 - -
Vian5g01149 1200 Pfam TCP family transcription factor 21 117 IPR017887 -
Vian5g01149 1200 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 579 820 IPR003439 GO:0005524
Vian5g01149 1200 Pfam ABC-2 type transporter 777 1200 IPR043926 GO:0140359
Vian5g01149 1200 Gene3D - 568 819 IPR027417 -
Vian5g01149 1200 ProSiteProfiles TCP domain profile. 22 76 IPR017887 -
Vian5g01149 1200 Pfam ABC transporter 599 748 IPR003439 GO:0005524
Vian5g01149 1200 ProSitePatterns ABC transporters family signature. 720 734 IPR017871 GO:0005524|GO:0016887
Vian5g01149 1200 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 580 816 IPR027417 -
Vian5g01149 1200 SMART AAA_5 605 806 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01149 Vian-Chr5 33708233 33716670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01149 15 102 TCP Transcription Factor Family AT5G23280 59.091 3.54e-25 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vian5g01149 ABC2_membrane_7 2.8e-213 CL0181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01149 - - gmx:100809312 1660.97