Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01142 ATGGGTGATATTGAGGGATCTCCGGGAAGCTCCATGCATGGAGTGACAGGGAGGGAACAAACCTTCATTGCCTCAGTGGCTTCCCCTATGGTCCCAACTGACACAACGGCAAATTTTGCTTTGCCAGTTGATTCTGAGCACAAAGCCAAGGTTTTTAAACTGTTTTCCCTGGCCAATCCCCATATGAGAACCTTCCACCTCTCTTGGATATCCTTCTTCACATGCTTTGTCTCAACCTTTGCAGCAGCCCCTCTTGTCCCCATCATTCGAGACAACCTCAACCTCACCAAGAGTGACATTGGGAATGCCGGGGTTGCTTCTGTCTCGGGCAGCATCTTCTCCAGGCTCACAATGGGTGCAGTTTGTGACCTCTTGGGCCCTCGTTATGGCTGTGCATTCCTCATCATGCTTTCTGCCCCAACTGTCTTCTGCATGTCGTTTGTGGATGACGCTGCAGGATATATAGCAGTGAGGTTCATGATTGGGTTCTCCTTGGCCACTTTTGTGTCATGTCAGTACTGGATGAGTACCATGTTCAACAGTAAGATTATTGGGCTTGTGAATGGGACTGCTGCAGGGTGGGGAAACATGGGTGGCGGAGCCACTCAGCTCATAATGCCCTTGGTCTACGAATTGATCAGAAGAGCTGGAGCTTCTCCCTTCACTGCCTGGAGAATTGCCTTCTTCGTTCCAGGTTGGTTGCATGTCATCATGGGGATCTTGGTCCTAACCCTAGGCCAAGATTTGCCTGATGGCAACCTTGGTACCTTGCAGAAGAAGGGTAATGTTGCCAAAGACAAATTCTCCAAGGTGTTATGGTATGCCATAACAAATTACAGGACATGGATTTTTGCCCTCCTCTATGGGTACTCTATGGGAGTTGAATTAACCACTGATAATGTTATTGCTGAGTATTTCTATGACAGGTTTAATCTGAAGCTACACACTGCTGGAATCATCGCTGCTTCATTTGGAATGGCAAATCTCCTGGCTCGTCCCTTTGGTGGATACACTTCTGATGTTGCAGCCAGGTTGTTCGGCATGAGGGGCAGGCTTTGGACCCTGTGGATCCTCCAAACCTTAGGAGGTGTTTTCTGCATATGGCTTGGTCGTGCCAACTCACTTCCCATTGCAGTCTTGGCTATGATCCTCTTCTCTATTGGCGCTCAAGCTGCATGTGGTGCCACTTTTGGCATCATTCCTTTCATCTCAAGGCGTTCTCTGGGGATCATATCCGGTCTAACTGGTGCAGGTGGCAACTTTGGCTCTGGTTTGACCCAGTTGATCTTCTTTTCAACCTCAAGGTTTTCTACATCCACTGGTCTCTCCTTGATGGGTGTCATGATTGTGTGTTGCACTCTTCCTGTGACTCTTGTTCACTTCCCCCAGTGGGGTGGCATGTTCCTCCCTCCTTCAAAAGACATCAATAAGTCCACTGAAGAATATTATTACACTTCTGAATGGAATGAGGAAGAGAAGCAAAAGGGTTTACATCAGAATAGTCTGAAATTTGCTGAGAATAGCCGTTCAGAAAGAGGTAAGCGTGTGGCCTCAGCCCTCACACCACCAAACACAACTCCAACCCATATCTAG 1593 0.4809 MGDIEGSPGSSMHGVTGREQTFIASVASPMVPTDTTANFALPVDSEHKAKVFKLFSLANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKSDIGNAGVASVSGSIFSRLTMGAVCDLLGPRYGCAFLIMLSAPTVFCMSFVDDAAGYIAVRFMIGFSLATFVSCQYWMSTMFNSKIIGLVNGTAAGWGNMGGGATQLIMPLVYELIRRAGASPFTAWRIAFFVPGWLHVIMGILVLTLGQDLPDGNLGTLQKKGNVAKDKFSKVLWYAITNYRTWIFALLYGYSMGVELTTDNVIAEYFYDRFNLKLHTAGIIAASFGMANLLARPFGGYTSDVAARLFGMRGRLWTLWILQTLGGVFCIWLGRANSLPIAVLAMILFSIGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQLIFFSTSRFSTSTGLSLMGVMIVCCTLPVTLVHFPQWGGMFLPPSKDINKSTEEYYYTSEWNEEEKQKGLHQNSLKFAENSRSERGKRVASALTPPNTTPTHI 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01142 530 Pfam Major Facilitator Superfamily 69 425 IPR011701 GO:0022857|GO:0055085
Vian5g01142 530 Gene3D MFS general substrate transporter like domains 264 465 IPR036259 -
Vian5g01142 530 FunFam Nitrate transporter 2.1 265 466 - -
Vian5g01142 530 Gene3D MFS general substrate transporter like domains 58 253 IPR036259 -
Vian5g01142 530 MobiDBLite consensus disorder prediction 495 513 - -
Vian5g01142 530 ProSiteProfiles Major facilitator superfamily (MFS) profile. 64 458 IPR020846 GO:0022857
Vian5g01142 530 MobiDBLite consensus disorder prediction 495 530 - -
Vian5g01142 530 FunFam High affinity nitrate transporter 57 254 - -
Vian5g01142 530 CDD MFS_NRT2_like 65 458 IPR044772 GO:0015112
Vian5g01142 530 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 1 516 IPR044772 GO:0015112
Vian5g01142 530 SUPERFAMILY MFS general substrate transporter 59 460 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01142 Vian-Chr5 33498315 33500332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01142 1 530 Inorganic Solute Cotransporters AT1G08090 80.377 0.0 899
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01142 K02575 - gmx:100807710 1043.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00505 11 5009005 5012441 Vian5g01142 5 33498315 33500332 PCT