Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01139 ATGTCTCACCATGCTGAATCGTCCGACTCGAAATCTGAGAAGAAAGACTTCTCGACAGCGATTCTGGAGCGGAAAAAATCTCCTAACCGATTGGTGATCGACGAAGCGGTTACCGATGATAACTCAGTGGTTTCCATGCATCCTGAAACCATGGAGAAAAATAAACTTTTTAACGGAGATACTATCCTCATCAAGGGAAAGAAACGTAGGGACACGGTTTGCATTGTTCTGGCAAACGAGAAATGTGAGGAAGCGAAGTTAAGGATGAATAAAGTTGTGAGGTCGAATTTGAGGGTTCGTCTTGGAGATGTTGTGTCTGTCTATTGCTCTGATGTTCCGTATGGGAAGCGTGTCCACATTCTTCCCATTGATGATACCATTGAAGGTCTCACAGGCAATCTCTTTGATTCATATTTGAAACCATATTTCTTGGAGGCTTATCGTCCTCTGAGAAAGGGAGATCTATTCCTGGTTCGAGGAGGGATGAGAAGTGTAGAGTTTAAGGTCATTGAAACTGATCCTGGGGAGTGTTGTGTGGTTGCTCCAGACACTGAAATATTCTGTGAGGGGGAACCTGTGAAAAGAGAGGATGAAGAAAGGCTGGATGATGTTGGGTATGATGATGTGGGTGGCGTCAGGAAGCAAATGGCACAGATTCGTGAGTTGGTAGAGCTTCCTCTTAGGCATCCACAACTTTTTAAATCGATTGGAGTGAAACCACCCAAAGGAATTCTGCTGTATGGACCCCCAGGATCTGGTAAGACCTTGATAGCAAGAGCTGTTGCTAATGAGACTGGAGCGTTCTTCTTTTGTATCAATGGACCAGAGATTATGTCCAAACTGGCTGGAGAGAGTGAAAGCAACCTTAGGAAAGCATTTGAAGAAGCTGAAAAGAATGCCCCCTCCATCATATTTATTGATGAGATTGATTCTATTGCACCCAAGCGAGAGAAAACACATGGTGAAGTTGAAAGGAGGATTGTTTCTCAACTTTTGACTCTTATGGATGGATTGAAATCTCGTGCACATGTTATTGTTATTGGAGCTACGAATCGGCCAAATAGCATGGACCCTGCATTGAGAAGGTTTGGTAGATTTGATAGGGAAATTGATATTGGTGTTCCTGATGAAGTTGGGAGACTTGAAGTCCTTCGCATACATACCAAAAACATCAAGCTTTCAGATGATGTTGATTTAGAGAGAATATCAAAAGATACTCATGGATATGTTGGTGCCGACCTTGCTGCCCTTTGCACTGAAGCTGCTCTGCAATGCATCCGGGAGAAGATGGATGTCATTGATTTGGAAGATGAGAGCATTGATGCTGAAATACTGAATTCTATGGCAGTTTCAAATGAACATTTCCTTACTTCTTTAGGAACTAGCAATCCATCTGCTTTACGTGAAACTGTTGTCGAGGTGCCCAATGTCAGTTGGGCAGATATTGGAGGTCTTGAGAATGTCAAGCGTGAGCTGCAAGAGACTGTTCAATATCCTGTGGAGCACCCTGAAAAATTTGAGAAATTTGGTATGTCACCATCAAAAGGAGTTCTGTTCTATGGTCCTCCTGGATGTGGGAAAACTTTGTTAGCCAAAGCAATTGCTAATGAATGTCAAGCTAACTTCATCAGCGTGAAAGGCCCAGAATTGCTCACTATGTGGTTTGGTGAAAGTGAGGCCAACGTTCGAGAAATTTTTGACAAGGCCAGACAATCAGCTCCATGTGTCCTCTTCTTTGACGAGCTTGATTCTATTGCTACCCAGAGAGGAAGTAGTGTTGGGGATGCCGGTGGAGCTGCTGATAGAGTTCTGAATCAACTTCTCACTGAAATGGATGGCATGTCTGCTAAAAAGACTGTGTTCATAATTGGGGCAACCAACAGACCTGACATCATTGACCCAGCTCTTCTACGGCCTGGCCGTCTAGATCAACTGATATATATTCCTCTCCCTGATGAAGAATCCCGTTATCAAATTTTCAAGGCATGCATGAGGAAGTCACCTGTCTCAAAAGAGGTTGATTTGGGAGCACTAGCTAAGTATACTAAAGGCTTTAGTGGTGCTGACATAACAGAGATATGCCAGCGGGCATGCAAATATGCTATTAGAGAAAACATAGAAAAGGACATAGAGCAGGAGAAGAAGAGAAGAGAAAGCCCTGGGGCCATGGATGAAGACAACGAAGAAGATGTTGCAGAGATCAAGGCTGCTCATTTTGAAGAGTCAATGAAGTTTGCGCGTAGGAGTGTTAGTGATGCTGATATACGTAAATACCAGGCATTTGCTCAGACCTTACAACAATCCCGTGGCTTTGGAAGTGATTTTAGGTTTCCAGAGGCTGGTGGATCTGACCCCTTTGCAACTTCTGCTGCTGGGGCCGAAGAAGATGATCTGTATAGTTAG 2403 0.437 MSHHAESSDSKSEKKDFSTAILERKKSPNRLVIDEAVTDDNSVVSMHPETMEKNKLFNGDTILIKGKKRRDTVCIVLANEKCEEAKLRMNKVVRSNLRVRLGDVVSVYCSDVPYGKRVHILPIDDTIEGLTGNLFDSYLKPYFLEAYRPLRKGDLFLVRGGMRSVEFKVIETDPGECCVVAPDTEIFCEGEPVKREDEERLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSMDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNIKLSDDVDLERISKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDESIDAEILNSMAVSNEHFLTSLGTSNPSALRETVVEVPNVSWADIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQIFKACMRKSPVSKEVDLGALAKYTKGFSGADITEICQRACKYAIRENIEKDIEQEKKRRESPGAMDEDNEEDVAEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSDFRFPEAGGSDPFATSAAGAEEDDLYS 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01139 800 SMART CDC48_2_2 129 195 IPR004201 -
Vian5g01139 800 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 475 763 IPR027417 -
Vian5g01139 800 CDD RecA-like_CDC48_r1-like 208 373 - -
Vian5g01139 800 ProSitePatterns AAA-protein family signature. 344 362 IPR003960 GO:0005524|GO:0016887
Vian5g01139 800 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 460 IPR027417 -
Vian5g01139 800 ProSitePatterns AAA-protein family signature. 620 638 IPR003960 GO:0005524|GO:0016887
Vian5g01139 800 Gene3D - 209 373 IPR027417 -
Vian5g01139 800 MobiDBLite consensus disorder prediction 711 730 - -
Vian5g01139 800 SUPERFAMILY ADC-like 26 108 IPR009010 -
Vian5g01139 800 FunFam Cell division control 48 375 466 - -
Vian5g01139 800 NCBIfam CDC48 family AAA ATPase 34 766 IPR005938 GO:0016787
Vian5g01139 800 FunFam Transitional endoplasmic reticulum ATPase 467 650 - -
Vian5g01139 800 PANTHER AAA-FAMILY ATPASE 401 768 - -
Vian5g01139 800 FunFam Transitional endoplasmic reticulum ATPase 7 111 - -
Vian5g01139 800 SUPERFAMILY Cdc48 domain 2-like 111 203 IPR029067 -
Vian5g01139 800 Gene3D - 467 650 IPR027417 -
Vian5g01139 800 Pfam Cell division protein 48 (CDC48), N-terminal domain 30 108 IPR003338 -
Vian5g01139 800 CDD RecA-like_CDC48_r2-like 488 648 - -
Vian5g01139 800 MobiDBLite consensus disorder prediction 772 800 - -
Vian5g01139 800 Gene3D - 112 208 - -
Vian5g01139 800 Pfam ATPase family associated with various cellular activities (AAA) 244 373 IPR003959 GO:0005524|GO:0016887
Vian5g01139 800 Pfam ATPase family associated with various cellular activities (AAA) 517 650 IPR003959 GO:0005524|GO:0016887
Vian5g01139 800 Gene3D - 654 762 - -
Vian5g01139 800 Pfam Cell division protein 48 (CDC48), domain 2 130 194 IPR004201 -
Vian5g01139 800 Pfam AAA+ lid domain 673 713 IPR041569 -
Vian5g01139 800 Pfam AAA+ lid domain 396 438 IPR041569 -
Vian5g01139 800 SMART AAA_5 240 376 IPR003593 GO:0016887
Vian5g01139 800 SMART AAA_5 513 652 IPR003593 GO:0016887
Vian5g01139 800 SMART CDC48_N_2 30 112 IPR003338 -
Vian5g01139 800 FunFam Transitional endoplasmic reticulum ATPase 205 373 - -
Vian5g01139 800 FunFam Cell division control 48 112 208 - -
Vian5g01139 800 Gene3D - 7 111 - -
Vian5g01139 800 Gene3D - 375 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01139 Vian-Chr5 33484338 33488844 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01139 446 776 Calmodulin-binding Proteins AT3G56690 41.994 4.15e-78 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01139 K13525 - tcc:18590940 1461.05