Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01137 ATGGTGTCGGACGCTAGCAAGAAGAAGGCTGCACAGAAGAAGGCCGCCGCCGCCGCTAAAAGAGGTGGAAAGGCCGCCGCCGCTGCCGTCGTCGCCGCTGCATCTTCCAAAGCTGCCGATAAGGCCGCCAACGGAATAGCCGATATGCATATATCTGATCGGACCTGTACCGGTGTCCTCTGTTCACATCCTCTTTCCAGAGATATTCGAATAGAGTCTCTGTCTGTTACATTCCATGGACATGATCTCATTGTTGATTCTGAACTGGAGCTGAACTATGGAAGGCGTTATGGTTTACTTGGGTTAAATGGGTGTGGAAAATCTACACTCCTTACAGCCATTGGTGAGCGGGAACTTCCAATTCCTGACCATATGGATATCTATCACCTCACGCGGGAGATTGAAGCCTCTGACATGTCTGCATTGGAAGCTGTCATAAGCTGTGATGAAGAAAGGTTGAAATTGGAGAAAGAAGCTGAAATTTTGGCGGCACAGGATGATGGAGGTGGTGAGTCCCTGGAACGTGTTTATGAGCGATTGGACGCCTTAGACGCAGCAACTGCAGAAAAACGTGCTGCGGAAATCTTATATGGTCTTGGCTTTGACAAGCAAATGCAGGCAAAAAAGACACGTGATTTTTCTGGTGGTTGGAGAATGAGAATTGCATTAGCACGAGCTCTATTTATGAACCCAACCATTCTTCTACTTGATGAACCAACCAATCACCTTGATTTGGAAGCTTGTGTTTGGCTGGAGGAGAGTTTGAAGAAGTTTGAACGCATTCTGGTTGTGATTTCACACTCTCAGGACTTTCTTAATGGTGTCTGCACAAATATTATCCACATGCAAAGCAAAAAACTGAAGCTCTATACTGGTAACTATGATCAATATGTTCAGACTCGTTCTGAGCTAGAAGAGAACCAGATGAAACAGTATAAGTGGGAGCAGGAGCAGATTGCCTCAATGAAGGAATATATTGCTCGATTTGGTCATGGTTCTGCAAAACTTGCTCGCCAGGCACAGAGTAAGGAGAAAACATTGGCAAAAATGGAACGTGGTGGACTTGCAGAAAAAGTGGTCAGGGACAAGGTTTTGGTTTTCCGTTTTACTGATGTTGGAAAACTTCCCCCTCCAGTTCTCCAGTTTGTTGAGGTGTCGTTTGGTTACACTCCTGATAACCTCATATACAAGAACATCGACTTTGGGGTTGATTTAGATTCTAGGGTCGCACTGGTTGGACCCAACGGGGCTGGGAAGAGTACACTACTGAAGCTAATGACAGGTGATTTGATGCCTTCTGATGGCATGGTTAGGCGTCATAATCATCTTCGGATTGCTCAATATCACCAGCATTTGGCTGAAAAGTTAGACTTGGATATGTCTGCTCTACAGTTTATGATCAAAGAATATCCTGGAAACGAGGAAGAGAAGATGAGGGCAGCGATAGGGAAGTTTGGTCTATCAGGTAAAGCCCAGGTGATGCCAATGAAGAACTTGTCTGATGGGCAGAGGAGTCGGGTGATATTTGCTTGGTTAGCTTGGAGGCAGCCACAAATGCTTCTTTTGGATGAACCAACCAATCATTTGGATATTGAGACAATTGATTCTTTGGCTGAGGCATTGAATGAATGGGATGGGGGCTTGGTGCTTGTTAGCCATGATTTCAGGCTCATAAATCAGGTGGCCCATGAGATATGGGTATGTGCTAATCAAAGTGTGACTAGATGGGAGGGTGACATTATGGAATTCAAGGCTCATCTAAAGGCCAAGGCGGGTTTATCTGACTAA 1788 0.4547 MVSDASKKKAAQKKAAAAAKRGGKAAAAAVVAAASSKAADKAANGIADMHISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGERELPIPDHMDIYHLTREIEASDMSALEAVISCDEERLKLEKEAEILAAQDDGGGESLERVYERLDALDAATAEKRAAEILYGLGFDKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEESLKKFERILVVISHSQDFLNGVCTNIIHMQSKKLKLYTGNYDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLAEKVVRDKVLVFRFTDVGKLPPPVLQFVEVSFGYTPDNLIYKNIDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLMPSDGMVRRHNHLRIAQYHQHLAEKLDLDMSALQFMIKEYPGNEEEKMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAWRQPQMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCANQSVTRWEGDIMEFKAHLKAKAGLSD 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01137 595 Pfam ABC transporter 396 527 IPR003439 GO:0005524
Vian5g01137 595 Coils Coil 287 307 - -
Vian5g01137 595 Gene3D - 69 333 IPR027417 -
Vian5g01137 595 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 15 590 - -
Vian5g01137 595 SMART AAA_5 93 295 IPR003593 GO:0016887
Vian5g01137 595 SMART AAA_5 405 593 IPR003593 GO:0016887
Vian5g01137 595 CDD ABCF_EF-3 380 571 - -
Vian5g01137 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 316 IPR027417 -
Vian5g01137 595 Pfam ABC transporter 280 356 IPR032781 -
Vian5g01137 595 ProSitePatterns ABC transporters family signature. 213 227 IPR017871 GO:0005524|GO:0016887
Vian5g01137 595 FunFam Abc transporter f family member 1 69 333 - -
Vian5g01137 595 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 69 309 IPR003439 GO:0005524
Vian5g01137 595 FunFam ATP-binding cassette sub-family F member 3 340 594 - -
Vian5g01137 595 CDD ABCF_EF-3 69 286 - -
Vian5g01137 595 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 380 595 IPR003439 GO:0005524
Vian5g01137 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 574 IPR027417 -
Vian5g01137 595 Pfam ABC transporter 87 241 IPR003439 GO:0005524
Vian5g01137 595 Gene3D - 345 593 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01137 Vian-Chr5 33464339 33467241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01137 380 567 Calmodulin-binding Proteins AT2G36910 25.688 1.76e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01137 K06185 - gmx:100809491 1087.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00510 11 5052586 5056326 Vian5g01137 5 33464339 33467241 PCT