Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01134 ATGGTTAACTCTGAAATGAACAGATCCGGGTACGGTGGTGACGGAATATACCGGTCTCTGAGGCCTTCTTTGGTTCTTCCACGGAACACCAACCTTTCACTCGTTTCGTTTCTCTTCCAGAGCGTTTCTTCTTTTCCGTCCAAAACCGCTCTCGTAGATGCTAACTCTTCTCAAACCCTCTCTTTCGCACAGCTCAAAGCCCAAGTAGCAAGGCTCGCCCATGGTTTCCTCAAATTGGGAATAAAGAAAAACGACGTCGTCCTTCTCCTTGCTCCCAACTCTATCCACTACCCCGTCTGCTTCCTCGCGGCCACAGCCATCGGAGCCATTGTCTCCACAGCCAACCCCATTTACACCGTCCACGAACTCTCGAACCAAGTCAAAGATTCCAATCCCAAACTGTTGATCACAATTCCTGAACTATGGGACAAAGCAAAGAAACTCAACCTCCCTGCCGTCATTCTCAGCACCAACAACAACCATCAGGACCCAACTAAAGACGTGTCACCGAAAATCTGGACTCTCCATGGGCTAATGGAGATGGCAGGGCCGGTGACGGAGCTGCCGGAGAGTGAGATTAAGCAGGGGGACACGGCGGCGCTGCTGTACTCCTCCGGGACCACGGGGCTGAGCAAAGGCGTTGTCCTGACACATGGGAACTTCATCGCGGCCGCTGTGATGATTAGCGTGGACGACGACCTGGCTGGGGAGGTAGACGACGTGTTCCTCTGTGTTTTGCCGATGTTCCACGTGTTTGGGCTGACGGTGGTGACGTACACAGCTCTACGACGAGGGAGTGCAGTGGTGACTATGGAGAAGTTTGAGTTGGAGGCGTTTTTAAAGGCCATTGAGAAGCACAGAGTGACGAAGTTGTGGTTAGTGCCTCCTATTCTGCTTGCTATGGCGAAACAACAGAGTGTGGTTCGGAACTACAATCTCTCTTCATTGAAGCGTATAGGTTCTGGTGCTGCTCCTCTGGGGAAAGAGTTGATGGAAGAATGTGGCAAGCATTTCCCTCATGTAGTTGTTTGTCAGGGCTACGGCATGACAGAAACTTGTGGCATTGTTTCTGTGGAGAATCCAAGAGCAGGGATTCGTCATACTGGGTCAACAGGAATGCTGGCTTCGGGAGTGGAAGCTCAAATAGTGAGTGTGGAAAAACAAAAGCCTCTCCCTCCTAAACAGTTGGGGGAAATATGGGTGCGAGGTCCGAACATGATGAAAGGTTATCACAACAATCCACAGGCCACAAGATTGACCATAGATGAAAAGGGGTGGGTGCACACAGGAGATCTTGGTTATTTTGATGAAGATGGACACCTTTATGTGGTTGACCGTATCAAAGAACTGATCAAGTACAAAGGTTTTCAGGTTGCACCAGCTGAACTTGAAGGCCTTCTCATTTCTCATCCTGAAATATTAGACGCTGTTGTTGTACCATATCCCGATGATGAGGCTGGTGAGGTTCCAATTGCCTATGTTGTTCGCTCACCCAATAGTTCAGTGACTGAAGAAGAAATTAAGAAGTTCATTGCTGATCAGGTTGCACCTTTCAAAAAATTGCGAAGGGTGTCATTCATCAGCAGTGTGCCAAAGACATCTTCAGGAAAAATTCTTAGAAGAGAGATTGCTGCAAAAGCTCGATCCAAAATTTAG 1656 0.4879 MVNSEMNRSGYGGDGIYRSLRPSLVLPRNTNLSLVSFLFQSVSSFPSKTALVDANSSQTLSFAQLKAQVARLAHGFLKLGIKKNDVVLLLAPNSIHYPVCFLAATAIGAIVSTANPIYTVHELSNQVKDSNPKLLITIPELWDKAKKLNLPAVILSTNNNHQDPTKDVSPKIWTLHGLMEMAGPVTELPESEIKQGDTAALLYSSGTTGLSKGVVLTHGNFIAAAVMISVDDDLAGEVDDVFLCVLPMFHVFGLTVVTYTALRRGSAVVTMEKFELEAFLKAIEKHRVTKLWLVPPILLAMAKQQSVVRNYNLSSLKRIGSGAAPLGKELMEECGKHFPHVVVCQGYGMTETCGIVSVENPRAGIRHTGSTGMLASGVEAQIVSVEKQKPLPPKQLGEIWVRGPNMMKGYHNNPQATRLTIDEKGWVHTGDLGYFDEDGHLYVVDRIKELIKYKGFQVAPAELEGLLISHPEILDAVVVPYPDDEAGEVPIAYVVRSPNSSVTEEEIKKFIADQVAPFKKLRRVSFISSVPKTSSGKILRREIAAKARSKI 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01134 551 FunFam Long-chain-fatty-acid--CoA ligase FadD 18 448 - -
Vian5g01134 551 FunFam 4-coumarate--CoA ligase 2 449 550 - -
Vian5g01134 551 Pfam AMP-binding enzyme 40 453 IPR000873 -
Vian5g01134 551 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 14 545 - -
Vian5g01134 551 SUPERFAMILY Acetyl-CoA synthetase-like 27 549 - -
Vian5g01134 551 ProSitePatterns Putative AMP-binding domain signature. 201 212 IPR020845 -
Vian5g01134 551 Gene3D - 14 448 IPR042099 -
Vian5g01134 551 Gene3D - 449 550 IPR045851 -
Vian5g01134 551 CDD 4CL 26 542 - -
Vian5g01134 551 Pfam AMP-binding enzyme C-terminal domain 462 537 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01134 Vian-Chr5 33411499 33414498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01134 6 551 Monolignol Biosynthesis Gene Families AT4G05160 67.949 0.0 790
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01134 K01904 - gmx:100808944 889.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00512 11 5091090 5094547 Vian5g01134 5 33411499 33414498 PCT