Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01132 ATGGGAAGAGCTCCATGTTGTGACAAGGCAAGTGTTAAGAAAGGGCCATGGTCACCAGAAGAAGACAGAAAGCTCAAGGACTACATAGACAAGAATGGAACTGGAGGAAATTGGATTGCTCTTCCTCAGAAAGCTGGTCTTAAGAGATGCGGGAAGAGTTGCAGATTGAGATGGCTCAATTATCTCAGACCCAACATTAAGCATGGAGATTTCTCAGATGAAGAAGACAGAATAATTTGCAGCCTCTATGTTAACATTGGAAGCAGGTGGTCAATTATAGCTGCTCAGTTACCAGGAAGAACTGACAATGATATCAAGAACTACTGGAACACCAAGTTGAAGAAAAAGCTCATTGGGTTGCTTCCTCTTTCTCATCACACAAAACAACCTTCATTTCCATCCTCTGCCCTTCAAAACCCTCCACCCTCTCCTTCGTCTCACCAACTGTACGGAGAATACGGCAACTACATCCCTGTAACAGCATCTTTCACAGGCATGGAACATCTTTCTCTTCCTTCAGCTAACTATGAAAGCACGACACCCTCGGTTTCTCAAACTTTCTACCAAAACCAAGACTCCATGGTCAGCGTTAGTCCCATGCAATGCTATTACCCTGTCGCCGACAGCATGCTCATGTTTGGAAGCGAAGGAAGTTGCAGCTCCTCCGACGGAAGCTGCACTCAGGGAAGAGAAATGAACCATAACTTGATGCTCAGTTACAACACTAACGATGGAGATAAGTCATGTGTTGGAGGGTGCTTCGACCAAACGCTAACACCGTTGGATTATGATCTTGAGGATATTAAGCAACTGATTAGCAGCAGTAGCAGCAGCTTGAATAATAATAATGTTGATGAAAACAAGAGAGAAGAGAAGGCGATGTACTGCTGCTATTACTAG 900 0.4422 MGRAPCCDKASVKKGPWSPEEDRKLKDYIDKNGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGDFSDEEDRIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLIGLLPLSHHTKQPSFPSSALQNPPPSPSSHQLYGEYGNYIPVTASFTGMEHLSLPSANYESTTPSVSQTFYQNQDSMVSVSPMQCYYPVADSMLMFGSEGSCSSSDGSCTQGREMNHNLMLSYNTNDGDKSCVGGCFDQTLTPLDYDLEDIKQLISSSSSSLNNNNVDENKREEKAMYCCYY 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01132 299 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vian5g01132 299 Gene3D - 69 136 - -
Vian5g01132 299 PANTHER OS09G0431300 PROTEIN 1 265 - -
Vian5g01132 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vian5g01132 299 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vian5g01132 299 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vian5g01132 299 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vian5g01132 299 FunFam Transcription factor MYB36 70 139 - -
Vian5g01132 299 FunFam Transcription factor RAX3 7 68 - -
Vian5g01132 299 CDD SANT 71 111 IPR001005 -
Vian5g01132 299 CDD SANT 16 62 IPR001005 -
Vian5g01132 299 Gene3D - 7 68 - -
Vian5g01132 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vian5g01132 299 SMART sant 13 64 IPR001005 -
Vian5g01132 299 SMART sant 67 115 IPR001005 -
Vian5g01132 299 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01132 Vian-Chr5 33379417 33380856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01132 1 119 MYB Transcription Factor Family AT5G57620 91.597 5.10e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian5g01132 Myb_DNA-binding 3.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01132 K09422 - gmx:100779919 444.121