Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01128 ATGGCATCAAAATCCTTCTCCAAACTCTCTCTGTTGCTTTTCTTCGCATCAGTTTCATTTTGCTATGCAACTTCTCGCTTCACTGATCACCCTGCATTCCCACCAAAATCATCAAAAGCAGAAAGACTCATAAGAAGCCTTAACCTATTCCCGAACGAACCCTTCAACAGTATTGAAGCTGACCACCTTCATAGTTTTGTCCCTGGTCAGATCGTCGAGAAGAACTTCTCCTTCCTTGGTCACTCTGGCCCTTCTATTGAAGACCTTGGTCACCATGCAGGTTACTATTCACTTCCTCATTCCAAAGCTGCAAGGATGTTCTACTTTTTCTTTGAATCACGAAAGAACAAGAACGATCCTGTTGTGATATGGTTGACTGGAGGACCAGGATGTGGAAGTGAATTAGCTTTGTTATACGAAAATGGTCCTTTTCATATTACCAAGGACTTGTCTCTTACATGGAATGATTACGGCTGGGATCAGGCATCAAATATTATATTCGTGGACCAACCAACTGGGACAGGTTTTAGTTACTCTTCTGATAAGAGTGACCTTCGTCACGATGAAACCGGCGTTAGCAATGATTTATATGACTTCTTGCAGGCGTTTTTCAAGGCTCATCCAGAGTTTGTTAAGAATGAGTTCTATATCACTGGAGAATCATACGCTGGACACTATATTCCTGCACTTGCATCACGGATTAACCAAAACAATAAAATGAAACAAGGAATCCATATAAACCTCAAGGGTATTGCTATTGGTAATGGATTAACAAATTCTCCAATTCAATACGAAATATACCCAGAATTTGCGTTACAGAACGGACTAATTACCAAGAATGAGTCAGATGATATCAGCAAGTTAATCCCAAACTGTGACAAAAAAGCTAAAGCCTGCGAATCTCGTGGTGGGATAATTTGTGAGGATGCATTAGATGCTTGTGAAGCAATTTTCGATAGAATATTGTCTATTGTCGGTGATCTTAATTACTATGACATTCGAAAGAAATGTGTGGGACCTTTATGCTATGACTTCAGCAATGTGGAGAAGTTGTTAAACTCAGAGAAAGTGAATAGTGCTTTAGGTGTGAGGAAGGAGTTGAAGTATGTTGCATGCAGTACAGCAGTGTATGACGCTATGCTGCAAGACACGATGAGAAATCTGGAAGTGTTTCTTCCTGGTCTTCTTGAGGATGGGATAAAGATGCTTGTGTATAATGGGGAAAAAGATCTGATATGCAATTGGCTTGGGAATTTAAGGTGGGTCAATGCCATGAACTGGTCGGGCCAAAAGGGATTTAGGGCATCTCCTACAGTGAAGTTTGTGGTTGATGGTGCAGAAGCAGGGACTCTAAACAGCTTCGGACCTCTCTCTTTCCTCAAGGTGCATGATGCTGGACACCTGGTACCTATGGATCAACCAAAAGCTGCACTACAGATGTTGGAAAGGTGGATGGGAGGGAAACTGACGAAATAA 1476 0.4153 MASKSFSKLSLLLFFASVSFCYATSRFTDHPAFPPKSSKAERLIRSLNLFPNEPFNSIEADHLHSFVPGQIVEKNFSFLGHSGPSIEDLGHHAGYYSLPHSKAARMFYFFFESRKNKNDPVVIWLTGGPGCGSELALLYENGPFHITKDLSLTWNDYGWDQASNIIFVDQPTGTGFSYSSDKSDLRHDETGVSNDLYDFLQAFFKAHPEFVKNEFYITGESYAGHYIPALASRINQNNKMKQGIHINLKGIAIGNGLTNSPIQYEIYPEFALQNGLITKNESDDISKLIPNCDKKAKACESRGGIICEDALDACEAIFDRILSIVGDLNYYDIRKKCVGPLCYDFSNVEKLLNSEKVNSALGVRKELKYVACSTAVYDAMLQDTMRNLEVFLPGLLEDGIKMLVYNGEKDLICNWLGNLRWVNAMNWSGQKGFRASPTVKFVVDGAEAGTLNSFGPLSFLKVHDAGHLVPMDQPKAALQMLERWMGGKLTK 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01128 491 FunFam Carboxypeptidase 78 491 - -
Vian5g01128 491 Pfam Serine carboxypeptidase 89 486 IPR001563 GO:0004185|GO:0006508
Vian5g01128 491 Gene3D alpha/beta hydrolase 74 490 IPR029058 -
Vian5g01128 491 SUPERFAMILY alpha/beta-Hydrolases 90 488 IPR029058 -
Vian5g01128 491 PRINTS Carboxypeptidase C serine protease (S10) family signature 203 228 IPR001563 GO:0004185|GO:0006508
Vian5g01128 491 PRINTS Carboxypeptidase C serine protease (S10) family signature 457 470 IPR001563 GO:0004185|GO:0006508
Vian5g01128 491 PRINTS Carboxypeptidase C serine protease (S10) family signature 155 167 IPR001563 GO:0004185|GO:0006508
Vian5g01128 491 PRINTS Carboxypeptidase C serine protease (S10) family signature 168 178 IPR001563 GO:0004185|GO:0006508
Vian5g01128 491 ProSitePatterns Serine carboxypeptidases, histidine active site. 457 474 IPR033124 GO:0004185
Vian5g01128 491 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 85 474 IPR001563 GO:0004185|GO:0006508
Vian5g01128 491 ProSitePatterns Serine carboxypeptidases, serine active site. 217 224 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01128 Vian-Chr5 33317497 33319712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01128 339 488 Calmodulin-binding Proteins AT2G22960 21.384 7.34e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01128 K16298 - gmx:100789937 740.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01128 5 33317497 33319712 Vian5g01128 5 33317497 33319712 ECH