Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01115 ATGAACAACAAAAGGCTTGAGAAATCGGAGATAGGGAAAAAGCCAGTGTGTCAACGATGGCAGCCGACCGAGTACCAGGTCAAGATCATGACAAACATCTTCAACTATGGAAACTATGGAGTCTCTCACCTTAGTCGGACTCAAATTTGTGAGATCACCGCACGACTCAGGGCTTACGGAGAAGCTGGGGAATACAACGTTTACTGTTGGTTCCAGAACCATGGGAACCGAGTGAGGCATCTACACTCAGAGCTGGACCCTACTGGCACAACATCGTCGTTCTCACCACCCTCGCTGCCGGAAGGTCCACGTTGGCTTCACAACCGCGGACTCTTTCCCGCAAACAGTGTCATCGGGATAGGAAGGACGACCTTTGGCGCGCTAATGGCAGGGTTGCTTCGGATGAACCTTTCTCTGGGCGTGAATCTTGTTGCTAAAGAGGAGGATCCTTCCCCTGCGCGGCTAGCTAAGAAAAGAAAGGTTGGGGTAGCTTTCTTTTCCCTGTTTTTGCTTGAGAGGAATACCTTGAAATGGCATGGGCTTAGGCTCGTTTTCAAATCCGAAAAAAATTAA 573 0.4956 MNNKRLEKSEIGKKPVCQRWQPTEYQVKIMTNIFNYGNYGVSHLSRTQICEITARLRAYGEAGEYNVYCWFQNHGNRVRHLHSELDPTGTTSSFSPPSLPEGPRWLHNRGLFPANSVIGIGRTTFGALMAGLLRMNLSLGVNLVAKEEDPSPARLAKKRKVGVAFFSLFLLERNTLKWHGLRLVFKSEKN 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01115 190 SUPERFAMILY Homeodomain-like 17 82 IPR009057 -
Vian5g01115 190 CDD homeodomain 19 84 IPR001356 GO:0003677
Vian5g01115 190 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 7 79 IPR044555 GO:0003700|GO:0099402
Vian5g01115 190 Pfam Homeodomain 18 79 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01115 Vian-Chr5 33141779 33142351 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01115 19 80 Wox Gene Family AT5G59340 43.548 7.10e-10 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vian5g01115 Homeodomain 1.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01115 - - var:108346427 107.457