Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01111 ATGGACAAAAGCTATCTTCATCAAGAGACTCTACTGCACATTGATGACTTTGAGCTACACGACTTTGATGAAGATCCTAACTTAGATCATTTGATCAATTTCATTCATTTGGAGAAGAAAGATGCTACTTGTGACTTCAATTCTGAGCTTATCAACGAAGCATTCATTGATAACTCGTTCTTGCCACACCCTGCAATCCCATATGATCAGTGCAATAGTAATGCTATGAATGTCTATGATTCAAATTCTGCACCTAACTCCTCTTGTTTTGATGGGGAAGCCAAAGGAGGAGGAGGTGAGGAAGATGATATGGAGCACTCATATGCAACAACAAGCACAACAACAACAACACCTACTAAGTCAAAACCAAAAACTGACAGATCCAAAACTCTGATTTCTGAGAGGAGGAGAAGAGACAGAATGAAGGAAAAGCTTTATGCATTGAGATCTTTGGTTCCCTTCATAACTAAGATGGATAAGGCCTCTATAATTGGAGATGCTGTCTCATATATGCACGAGCTTCAAGCACAAGCCAACATGCTTAAGGCTGAGGTTGAAGCACTTGAAACTTCCTTACTGCTGTCTAAAAACTATCAAGGATCAGTTGAAAATCCCATGAAGGATGAATTTACCAATAACATCCTTTCAATACGCAAGAAGATAATCCAGATGGACATGTTTCAAGTGGATGCAAAAGGGTTTTATGTGAAAATAGTTTGCAACAAAGGAGAAGGGGTGGCTGCCTCATTGTACAAAGCTCTAGAGTCTCTGACAGGCTTTCATGTTCAGAATTCAAACTTATCCACAGTTGGTAACAGTTTTCAACTTACATTTTCATTGAATGTGAAAATCTCTGAGCCAGAAATTAACCTGCACAACATGAGGATTTGGGTGTGTGAAGCTTTTGTGAAGCAAGGCTTTGAATTCATACCATTTTTAATGCTTGACTCTTTCAATCTATAA 963 0.3863 MDKSYLHQETLLHIDDFELHDFDEDPNLDHLINFIHLEKKDATCDFNSELINEAFIDNSFLPHPAIPYDQCNSNAMNVYDSNSAPNSSCFDGEAKGGGGEEDDMEHSYATTSTTTTTPTKSKPKTDRSKTLISERRRRDRMKEKLYALRSLVPFITKMDKASIIGDAVSYMHELQAQANMLKAEVEALETSLLLSKNYQGSVENPMKDEFTNNILSIRKKIIQMDMFQVDAKGFYVKIVCNKGEGVAASLYKALESLTGFHVQNSNLSTVGNSFQLTFSLNVKISEPEINLHNMRIWVCEAFVKQGFEFIPFLMLDSFNL 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01111 320 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 43 279 - -
Vian5g01111 320 MobiDBLite consensus disorder prediction 122 136 - -
Vian5g01111 320 MobiDBLite consensus disorder prediction 89 136 - -
Vian5g01111 320 Gene3D - 117 191 IPR036638 GO:0046983
Vian5g01111 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 174 IPR011598 GO:0046983
Vian5g01111 320 SMART finulus 131 180 IPR011598 GO:0046983
Vian5g01111 320 Coils Coil 171 191 - -
Vian5g01111 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 194 IPR036638 GO:0046983
Vian5g01111 320 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 121 191 - -
Vian5g01111 320 Pfam Helix-loop-helix DNA-binding domain 132 175 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01111 Vian-Chr5 33114139 33115428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01111 11 307 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 47.573 7.03e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian5g01111 HLH 6.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01111 K26214 - gmx:100778649 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00521 11 5197004 5198431 Vian5g01111 5 33114139 33115428 PCT