Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01109 ATGGAGATGGAAGGGTTAGATTCTAATTCTAATTCCAATTCCTATTCTAGCTCTGCCCAGAGCAACATAGCCAAGGGCAAACGGACCAAAAGGATGAGGCTTTTGTCCCCTTCTGGTGTCGTCGTTGTTACCACCGCCGCCACCACTGGACTCACCACCACCACCACCAGTTGCTCCAGTCCTAACTCCGGTGGCTCCTCCACCACCACTTATGAGAGCGAAGAAGAAGACATGGCAAATTGTTTGATTCTCTTGGCCCAAGGAGGGGAATCTCACCCTCATCAACCTCATCATCACAAACAACGAGTTGAAGATCATAACGGTGTCAAGACAGCAAAGGGTAACGGTAACACCATCACCACCGCCGCCGCCGCCGCAACAACCGCAGTTGACACCAAAGTTGGTTTCTTTATTTATGAGTGCAAAACGTGTAACCGAACGTTCCCTTCGTTTCAAGCACTGGGTGGACACAGGGCGAGTCACAAAAAGCCCAAACTTTCGCCTGAAGAGAAAAAACCACCACCCTCTCAATCGCCACACGTGGCTGTTACAACCTATGATCGGTTCGAAGAGGATAACGTTAAAAATGGTCCTCCGATTTCCCTTCAATTGGGTCATGGCAACAACAAGGGCAAGATTCATGAATGTTCCATCTGCGGTTCGGAATTCTCATCAGGACAAGCATTGGGTGGACACATGAGGAGGCATAGGTCATCGACAAACACCAACACTGTTGACACATCAGGTTCTAACACCGTCATCGCCGTAGCCACCACTGTTTCTCCGCCGCGGAACGTCTTGCAGTTGGATCTTAACCTCCCGGCGCCGGAGGATGATATCCGGGAGGCTAAGTTTCAATTTCCGGTAACAACTCAGATGCTGGTTGGTACTCCGGCTTTGGTAGATTGTCTTTATTAG 918 0.4978 MEMEGLDSNSNSNSYSSSAQSNIAKGKRTKRMRLLSPSGVVVVTTAATTGLTTTTTSCSSPNSGGSSTTTYESEEEDMANCLILLAQGGESHPHQPHHHKQRVEDHNGVKTAKGNGNTITTAAAAATTAVDTKVGFFIYECKTCNRTFPSFQALGGHRASHKKPKLSPEEKKPPPSQSPHVAVTTYDRFEEDNVKNGPPISLQLGHGNNKGKIHECSICGSEFSSGQALGGHMRRHRSSTNTNTVDTSGSNTVIAVATTVSPPRNVLQLDLNLPAPEDDIREAKFQFPVTTQMLVGTPALVDCLY 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01109 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 214 241 IPR013087 -
Vian5g01109 305 ProSitePatterns Zinc finger C2H2 type domain signature. 216 236 IPR013087 -
Vian5g01109 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 139 166 IPR013087 -
Vian5g01109 305 MobiDBLite consensus disorder prediction 1 32 - -
Vian5g01109 305 SUPERFAMILY beta-beta-alpha zinc fingers 139 236 IPR036236 -
Vian5g01109 305 Pfam C2H2-type zinc finger 214 238 - -
Vian5g01109 305 Pfam C2H2-type zinc finger 139 164 - -
Vian5g01109 305 MobiDBLite consensus disorder prediction 90 109 - -
Vian5g01109 305 MobiDBLite consensus disorder prediction 92 109 - -
Vian5g01109 305 PANTHER ZINC FINGER PROTEIN ZAT5 65 287 - -
Vian5g01109 305 ProSitePatterns Zinc finger C2H2 type domain signature. 141 161 IPR013087 -
Vian5g01109 305 SMART c2h2final6 214 236 IPR013087 -
Vian5g01109 305 SMART c2h2final6 139 161 IPR013087 -
Vian5g01109 305 MobiDBLite consensus disorder prediction 52 73 - -
Vian5g01109 305 MobiDBLite consensus disorder prediction 1 25 - -
Vian5g01109 305 Gene3D Classic Zinc Finger 137 236 - -
Vian5g01109 305 MobiDBLite consensus disorder prediction 152 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01109 Vian-Chr5 33092584 33093501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01109 18 305 C2H2 Transcription Factor Family AT2G28200 42.295 7.22e-57 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian5g01109 zf-C2H2_6 1.3e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01109 - - var:108346781 422.165