Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01107 ATGATGCCAAAGGCTACATCTTCCTCCACAGACGATTTTCAAGCATCTCAAATGTTTCCTGTGAATGAATATTTGGCTTCATCTTCTGTTGAACTAAGTTCTTCCTCAACTTCACACTCTTCTACCTCCCTCCTCTGCTATCTCTCTCTTCTGAAGGACAAGCTAGGTCAGCTGCAGAACCTGGTTGATGTTCTTGTCACCCCTCAACATAACCTAACTCCCATGGCAATCTCCACCATGAACGCAACACTCGAAGAAATCATAGTGGCAGCCACATCAATGAGATTTACCTGTCAGCAAATGACTCTTGGTTCCTCTTCAGGTACTAGTATTGCTAATGAATTGCACCGAAACCAGAACCAGCAACAACTTGATCATGGTAGCGTATTATCACCTCATCATCCATCAAACTTTGGCAACAACAATAGGGGTATGCTTAGTATGAGTAGCATTAACATGAGCTCTTATATGATTAGAGGGCAAAGTAAATTCCTATCTGGTATAGAAGGAGGGGCACTGGATTGGTTTGGTGAAAGCTACAACAATAACAATATTGGAGATTGTAACATTAAGGATGAAGAAGCCGACAGGAACATCATGGGAGAGAGTGATGTAATCGAATTGGATGCTGCTGATTTGTTGGCCAAGTACTCTTATTTTTGCCAAGTGTGTGGGAAAGGGTTCAAGCGTGATGCGAATTTGAGGATGCACATGAGGGCTCATGGGGAAGAGTACAAAACAAGTGCAGCCTTGAGCAACCCAATGAAAAGGAGGGAGAGTTTATTGGGTGAGGGAAGTTCCAGCAAGAAATATTCGTGCCCTCAAGAAGGGTGTAGGTGGAACCAGAAACATGCAAAGTTCCAGCCATTGAAGTCAATGATCTGTGCTAAAAACCATTACAAGAGGAGCCACTGCCCCAAGATGTACGTGTGCAATAGGTGCAACCAGAAGCAGTTTTCGGTGCTTTCTGATTTGAGGACACATGAGAAGCACTGTGGGGACGCCAAGTGGCAGTGCTCCTGTGGGACAACATTTTCTAGGAAAGACAAGCTTATGGGCCATGTTGCTTTGTTCGTGGGACACACCCCAGCTGTTCATGGCTTCTCGACATTTGTTCGATGA 1122 0.4456 MMPKATSSSTDDFQASQMFPVNEYLASSSVELSSSSTSHSSTSLLCYLSLLKDKLGQLQNLVDVLVTPQHNLTPMAISTMNATLEEIIVAATSMRFTCQQMTLGSSSGTSIANELHRNQNQQQLDHGSVLSPHHPSNFGNNNRGMLSMSSINMSSYMIRGQSKFLSGIEGGALDWFGESYNNNNIGDCNIKDEEADRNIMGESDVIELDAADLLAKYSYFCQVCGKGFKRDANLRMHMRAHGEEYKTSAALSNPMKRRESLLGEGSSSKKYSCPQEGCRWNQKHAKFQPLKSMICAKNHYKRSHCPKMYVCNRCNQKQFSVLSDLRTHEKHCGDAKWQCSCGTTFSRKDKLMGHVALFVGHTPAVHGFSTFVR 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01107 373 Pfam Zinc finger, C2H2 type 219 241 IPR013087 -
Vian5g01107 373 SUPERFAMILY beta-beta-alpha zinc fingers 217 244 IPR036236 -
Vian5g01107 373 ProSitePatterns Zinc finger C2H2 type domain signature. 221 241 IPR013087 -
Vian5g01107 373 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 32 365 IPR044300 GO:0010044|GO:0010447
Vian5g01107 373 FunFam Zinc finger protein 574 218 242 - -
Vian5g01107 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 219 246 IPR013087 -
Vian5g01107 373 Gene3D Classic Zinc Finger 211 278 - -
Vian5g01107 373 Gene3D Classic Zinc Finger 307 357 - -
Vian5g01107 373 SMART c2h2final6 219 241 IPR013087 -
Vian5g01107 373 SMART c2h2final6 309 331 IPR013087 -
Vian5g01107 373 SMART c2h2final6 271 304 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01107 Vian-Chr5 33075091 33076212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01107 41 369 C2H2 Transcription Factor Family AT5G22890 49.563 1.61e-106 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian5g01107 zf-C2H2 8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01107 - - vum:124833786 703.36