Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01103 ATGGCTATTGCTGGTCTACACAGTGTGTCTGTGCTCGACTCTCCTTTCCTCAGGGATTCCCATTCCCAGTCGTCTAGGAGAGGGGGAGAGGGAAGACGGGGAAGCACCCGGTCATCTTCACTCTTGCAAATGTGGCGAGAGATTGAAGATGAACATGTGGTGAATCAAGTTCAAGGAAGGCCTGGTGATGTACCTCTTGATCAAAGGAGGAATGGGTTGATTGCTGAGCTCTCTCAGGAAGATAGACTGGATATCCAAGAGAGAGGGCAGGGGCATGTTTTAGAAGATGCAGTTTTGGTTGAGAATGAATCTGAAACATGGTCACAGTCACCAAGTCATAATGAGTCCCATGAAGATCACGAGGATTTAAATAATTCTAGCTGTGAAAACTCTTCTGATTTAGGAGAAGTTGAAAGGGAAAGAGTTAGGCAAATTTTCAGGGAATGGATGAATAGTGGTGCCAGGGATCATGTATCAAGTGGATCCCGACGAAGTAGTGGTTCAAGGAGAGAATGGCTTGGGGAAACTGAACAGGAAAGGGTGAGAATTATTAGGGAGTGGGTACAAATGAGTAGCCAGCAGAGAAGTGTTTCATCTGGGGAAAACAGGGAAGAACCATCTGCTGAAATTGGTACACAAATTGAACGTGTTCGTGATGGACTCATTGTTAACCAGAATGGGGGCCAAAATGAGCATACACGGAGGGGCATACGGAAATTATGCGGCCGACAGGCTATGCTTGATATGCTTAAGAAGGCTGAAAGAGAGAGGCAAAGAGAAATTGAGGATTTGTCAGTACATCGGGCTGTATCTCAATTCCCCTATCGTAATCGAATTCAGGCATTGCTTAGAGGCAGATTCTTGAGAAATGATAGACCTGTCGATAATAACAGGCCCCTATCTGTTGCAGAAAGTGAATTGGGCTTCTTGAGGCGTAAACAAACTGTATCAGGTCTAAGGGAGGGGTTTATCGCTAGAAAGGAGAATTGTGGTTGCAGTCAAGCAACCAGCAATGTATCTGATACCTCGTCAAATGTTGATAATATTGATTTTAGCACTAATGAACAAATGGGATCAAACAGTTCACATTTAGTCCCAATTGTACATTCTGAACAGTCTGACCCTAATGACAGAGGAAGCGATGGTCTCAGGGTATCAGACAGCCAGAGCTGTGTACAAGGTACCACATCTGAGAACCTAAATTGCCAAGAATCTAATGCTCAAGTAGGAGATCGAATGCAACATTTGCCTATTGAATCACTAGATTGCCAATCATCATTCAGTGCTAGTGTTGAAAGAGTGAACAACACAGAGCAAAATGTTGATGTGTTGCCTATTGATTATGGTGCTAATGAAATTACCCAACAAAGCTTGCGAATTGAAGATTCGCAGCATAGTAATAACCAGGAACTCAGCGAGGTGCATATTGAGCATTCTGAGCTGTGTGATATAAATAGTAACGAAAACAATTCTTCAAATCATGACATTCATATGGATGGTAATGTCGACGATGTAAATTGGAATGAATCTAGTGCTCTGGAAGTAGAACAGCCAGAAGAAGCTTTTGAAAATGAAGGAAGTGACTGGTATCAGAATAACATCGAATGGAGAAATAGTGCTGAGGAAAATGCGGATGGTAATCAGATCAGTAACACAGGAAATGAGTGGCCAGAAAACACTTTGGGAAATGCGGGTGGAGAAAACTCTCATCTGCAAGAATCTCATGAGGCATGGCAAGAAGATGGTGGCTTCCAAGAGGCTGTGGAAAATTGGTTGGGAGGACCTTCAGATCATGAAAATGCTCCAGTTGGTAGAATTCGAGGATTTTATTTTCCTGAAGATGACAATGTGTACAGTGTTGAACTCAGAGAACTTCTTAATAGGAGAAGTGTCTCGAACCTCCTTCACAGCAGTTTCCGGGACAGTCTGGATCAGTTAATACAATCATATGTTGAAAGGCAAGGTAATGCAAACATTGACTGGGAATTGCAAGAAACAACCCCATCATCTGACTCGGTAGAGCAGGACCTTGAACAGCAAAGTAGAGATCAAATTGTTGATCAGGAGGGTCCTGTTAATAGTCCACTTGATCTGCCCTCTTTACCTATACCGCCTCCTCTGCCTCTATGGGACCAGCACCACCACCATCGTGACAACTGGTCACAGAATGACATAAATAATCAGCGTCTAGGAATTGATTGGGAGATTGTTAATGACTTGAGAATTGACATGGCTCGATTGCAACAAAGGATGAATAACATGCAGAGAATGCTGGAGGCCTGTATGGATATGCAGCTTGAGTTGCAGCGCTCTATAAGACAAGAAGTATCTGCAGCCCTAAATCGCTCTGCTGAAGTACATGATTATTGCGAGTCACCAGAAGATAAATCTAAATGGGAATGTGTGAGAAAAGGTCTTTGCTGTGTATGCTGCGAAAGCAATATCGATTCTTTGTTGTACAGATGTGGTCATTTGTGTACATGTTCAAAATGTGCCAATGAGTTGCTCCAAAGCAGGAAGAAATGCCCTATGTGTCAAGCACCTGTGGTGGAGGTGATAAGGGCTTACTCTATACAATAA 2580 0.431 MAIAGLHSVSVLDSPFLRDSHSQSSRRGGEGRRGSTRSSSLLQMWREIEDEHVVNQVQGRPGDVPLDQRRNGLIAELSQEDRLDIQERGQGHVLEDAVLVENESETWSQSPSHNESHEDHEDLNNSSCENSSDLGEVERERVRQIFREWMNSGARDHVSSGSRRSSGSRREWLGETEQERVRIIREWVQMSSQQRSVSSGENREEPSAEIGTQIERVRDGLIVNQNGGQNEHTRRGIRKLCGRQAMLDMLKKAERERQREIEDLSVHRAVSQFPYRNRIQALLRGRFLRNDRPVDNNRPLSVAESELGFLRRKQTVSGLREGFIARKENCGCSQATSNVSDTSSNVDNIDFSTNEQMGSNSSHLVPIVHSEQSDPNDRGSDGLRVSDSQSCVQGTTSENLNCQESNAQVGDRMQHLPIESLDCQSSFSASVERVNNTEQNVDVLPIDYGANEITQQSLRIEDSQHSNNQELSEVHIEHSELCDINSNENNSSNHDIHMDGNVDDVNWNESSALEVEQPEEAFENEGSDWYQNNIEWRNSAEENADGNQISNTGNEWPENTLGNAGGENSHLQESHEAWQEDGGFQEAVENWLGGPSDHENAPVGRIRGFYFPEDDNVYSVELRELLNRRSVSNLLHSSFRDSLDQLIQSYVERQGNANIDWELQETTPSSDSVEQDLEQQSRDQIVDQEGPVNSPLDLPSLPIPPPLPLWDQHHHHRDNWSQNDINNQRLGIDWEIVNDLRIDMARLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSAEVHDYCESPEDKSKWECVRKGLCCVCCESNIDSLLYRCGHLCTCSKCANELLQSRKKCPMCQAPVVEVIRAYSIQ 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01103 859 ProSiteProfiles Zinc finger RING-type profile. 807 846 IPR001841 -
Vian5g01103 859 MobiDBLite consensus disorder prediction 102 136 - -
Vian5g01103 859 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 455 859 - -
Vian5g01103 859 SUPERFAMILY RING/U-box 806 852 - -
Vian5g01103 859 Coils Coil 243 263 - -
Vian5g01103 859 MobiDBLite consensus disorder prediction 382 397 - -
Vian5g01103 859 MobiDBLite consensus disorder prediction 688 710 - -
Vian5g01103 859 MobiDBLite consensus disorder prediction 192 206 - -
Vian5g01103 859 MobiDBLite consensus disorder prediction 543 572 - -
Vian5g01103 859 Pfam Zinc finger, C3HC4 type (RING finger) 804 851 - -
Vian5g01103 859 Coils Coil 737 764 - -
Vian5g01103 859 MobiDBLite consensus disorder prediction 369 397 - -
Vian5g01103 859 MobiDBLite consensus disorder prediction 17 39 - -
Vian5g01103 859 MobiDBLite consensus disorder prediction 192 216 - -
Vian5g01103 859 MobiDBLite consensus disorder prediction 543 575 - -
Vian5g01103 859 MobiDBLite consensus disorder prediction 112 126 - -
Vian5g01103 859 CDD mRING-HC-C3HC5_NEU1 807 856 - -
Vian5g01103 859 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 791 857 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01103 Vian-Chr5 33025434 33029391 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01103 807 853 C3H Transcription Factor Family AT3G06140 40.426 2.84e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01103 - - gmx:100801329 1382.47