Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01102 ATGCAACACCTTTTGTTATTCTCACAAGCAAGAAGAACATTGGACAGTGTTTGGTTGCTGAGAAATTTAAAACAAAAAATGGAATTCTCTTACCGCAGATTGCTGCTGCAGAACGAGGACGTTCCAATCTCCACGTCCATGCCTCCTCTTCCTCACGCCAAACACGCCACAAACGCTTCCTCGCCGCAAGTGTCCTTAGGAAGCCCTCTGGAAGTGTCCATTCGTCCGGTGTTCACTTCGAGCGTTGCCTACGTCTTCCTCATCCTCTTCACCACCTTCTTCTTCATCGGATTCGTGTTTCTCTACTTCCAACAGCACGCCTCCTCGTCGGACTCCGAGTCCGGCGCCATCCGCCGGCGAGCACAGTCGGAGTCCGTGGCGGAGAAGTCTCTGGCGGTGGTGGCGGATGCGGCGAGGCAGGGGGATTGCGCGATATGTCTGGAGGAGGTGGGAGAGGGAGAGGCGGTGAAGATGATTGCGTACTGTAAACACGTGTTCCACGCGGATTGCATTGACAGGTGGCTGGAGAAGCAGGTGACATGCCCCGTGTGCCGGTGCTGCTGCGAGAGGTGTGGAGAGGTGGAGTCGGTGACGGTGAGAGGAGACGAAGGAGGAGATGGAGAAGTGGTTTCCGTAAGAAGCTTGGATTAG 651 0.5515 MQHLLLFSQARRTLDSVWLLRNLKQKMEFSYRRLLLQNEDVPISTSMPPLPHAKHATNASSPQVSLGSPLEVSIRPVFTSSVAYVFLILFTTFFFIGFVFLYFQQHASSSDSESGAIRRRAQSESVAEKSLAVVADAARQGDCAICLEEVGEGEAVKMIAYCKHVFHADCIDRWLEKQVTCPVCRCCCERCGEVESVTVRGDEGGDGEVVSVRSLD 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01102 216 SMART ring_2 143 184 IPR001841 -
Vian5g01102 216 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Vian5g01102 216 PANTHER RING FINGER DOMAIN-CONTAINING 48 188 - -
Vian5g01102 216 Pfam Ring finger domain 142 185 IPR001841 -
Vian5g01102 216 SUPERFAMILY RING/U-box 142 189 - -
Vian5g01102 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 185 IPR013083 -
Vian5g01102 216 SMART ringv_2 142 185 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01102 Vian-Chr5 33011652 33012302 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01102 78 203 Rapid Response to Elicitors AT3G05200 35.862 3.43e-20 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01102 - - var:108339852 379.407