Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01096 ATGGCTCCGTTTCCGTCTGAGAACGGCGTCGAAGGAGACGACGAGAGAGAAGAGGAAGATGAAGAGGAAGAAGAAGATGAAGAAGAAGTGGAAGATGAAGAAGACGAAGAGGAACCGAGGCTCAAGTACCAGAGAATGGGAGGTAGCATACCTTCGCTGCTAGCGAGTGACGCCGCGTCATGTATTGCCGTCGCCGAGCGGATGATCGCTCTCGGCACTCACGGCGGCACCGTTCACATCCTCGATTTTCTCGGTAATCAGAGCTGGGTAGATCAAATTTACGGAACGGAACAATCTGTATTATTGAGAAGTTCGTTCATTGATACTCTCTTCAAATGTATGGTTAAGGAATTCTCCGCACATGCTTCTGTTGTCAACGACCTTAGCTTTGACACAGAAGGTGAATATATTGGAAGCTGTTCTGATGATGGATCAGTTGTGATAAACAGCCTTTTCACTGATGAGAAATTAAAGTTTGATTACCATCGGCCGATGAAGGCAGTTGCCTTGGATCCAGATTATGCAAAGAAAATGTCCAGGAGATTTGTTGCTGGAGGTTTGGCTGGTCATTTATATTTGAATTCAAAGAAATGGCTGGGCTACCGTGATCAGGTTTTGCACTCTGGTGAAGGTTCAATACATGCTGTGAAATGGAGAGCAAGTCTTGTTGCTTGGGCTAATGATGCAGGAGTGAAGGTTTATGATACTGCCAATGACCAGCGTGTTACATTTATTGAAAAACCGCGAGGGAGCCCACGCCCTGAGCTTTTACTTCCTCACCTGGTCTGGCAGGATGATACCCTTTTGGTAATTGGATGGGGAACATCTGTCAAAATTGCTTCAATAAGGACAATAAGGGCAGCGAATGGGTCGTTCAGGCAGGTTCCTCTGTCTGGTGTGGCCCAGGTGGATATTGTGGCATCTTTCCAAACCAGCTATTTCATCTCAGGGCTTGCTCCCTTTGGTGATGCTTTGGTTGTTCTTGCATATATCCCTGGAGAAGATGGAGATAAGGATTTTAGTAGCTCAGCTCCTTCACGGCAGGTAGCAGTTATGCTGGCGGTCAGTGGGCTGCAGCATGGGTGGCATGAAAAAGCATTGGCTGTGGTTGAATCTGGTCAGGGACGAAGTGAACTACTTGATGAGGTGGGATCTAGGTACCTTGATCATCTGATTGTGGAAAGAAAATACAGTGAAGCAGCATCTCTGTGTCCCAAGTTGCTTCGGGGATCAGCTCCAGCTTGGGAGAGATGGGTTTTCCATTTTGCACATCTTCGTCAACTACCTGTTTTAGTTCCTTACATGCCTACAGAAAACCCCAGACTACGTGACACTGCTTATGAGGTTGCTCTTGTTGCATTGGCTACAAATTCTTCTTTTCATAAGGATCTCTTGTCCACTGTAAAATCCTGGCCTTCTGTAATTTATTCTGCATTACCTGTAATTTCAGCCATTGAACCTCAGCTAAATACTTCGTCCATGACTGATTCACTTAAGGAGGCACTGGCAGAGTTGTATGTAATCAATGGGCAATATGAGAAGGCCTTCTTGTTGTATGCTGATCTTATGAAACCAGAAGTATTTGATTTTATTGATAAACATAACCTACATGATGCAATTCGTGGAAAGATTGTTCAATTAATGATGCTAGATTGCAAGCGTGCAGTTCCTTTGTTGATCCAAAATAGAGACTTAATAAGTCCACCCGAAGTTGTGAAGCAACTTCTAAATGCTGATGATAAGAGTGATCGTAGATATTTTTTACATCTATATCTTCATTCATTATTTGAAGTAAATCCTCATGCTGGGAAAGAATTCCATGATATGCAGGTAGAACTCTACGCAGACTATGATCCAAAGATGCTACTACCTTTTCTCCGTAGCAGTCAACACTACACCCTTGAGAAGGCTTATGACATTTGCATTAAAAGGGACCTATTGAGGGAGCAAGTCTTCATTCTAGGAAGGATGGGAAACTCAAAACAAGCCCTAGCTGTTATTATAAACCATTTGGGGGATATAGAGGAGGCTGTAGAGTTTGTCACCATGCAGCATGATGATGAACTTTGGGAAGAATTGATCAAACAATGCCTTCACAAACCTGAAATGGTGGGCATATTGTTGGAGCACACGGTTGGAAATCTGAATCCCCTTTACATTGTAAATAAGGTTCCTAATGGGTTGGAAATACCTCGGCTCCGGGATCGACTGGTTAAGATTATCACTGACTACAGGACTGAAACATCACTCAGGCATGGGTGCAATGATATCCTTAAGGCGGACTGTGTCAATCTTTTAATCAAGTATTACAACGAGGCAAGGCATGGAGTTTCTTTAGGTAATGAAGAAGATGAGACACGAGTTAAAATGAGTGACACTCGTGCTTCTCAGAATGTATCGGTCATTGTTTTCTTTTGCTGTCATGGTTATCATACAACTTGTCTCATGGATTCCTCTTACACTAGTAGTAACAAGAAAGAAACCACGTCCCTAGAGGCAGGAATGTATGATGGTTACAATGGTTATGAGGACGATGCTAGCGATGACGTTGAAGATGAAGAAACCAAGTCGGGAACTGAAAGAATCGTGTCTGTGTCCAGTAATCCAACGCCGCCCATCAGCGCGAGGAATGATAACCTAGTGGTGTATCCAATTCCTTCACGCGCCTCTTTTGAAAATCCACAATACTCGCGCTGCCTTCGCGAAACGTGTCTAACCAAAAAACTTCTCAATTCACTACTTAAAGAATCACTTGAAGAGCCATTTTTCATAAAATTCCAATCACCACAAACTACACTGCCAAATCTCTCACCTGCAACAATGTCTCGTCGCGGCTCTCAGCATTCCGATTTCAACCGTCCGCCGCAATCCTCGGCTTCTTCTTCCACTGCCGGAGGCCGAGGCCGAGGCCGCGGTCGAGGTCGCGGACATTCCGCTCCGTCTCCTCCGGCTCAAACATCCTACCCTCCTCCTGCACAAACTTCATCCGCTGCTTCTCTGGCCCCGTCTACTGCCGCTCCTCCCCGCGCGGTGGCGCCTGTCCCTGCATCAGCAGGGCCTGGTCCATCCCGCCCTCCGCCGGTCCAAGCCTCGCCGGCGCCAGTTTCTGGATCCGGAGCGGTTACTACAACGGCGCCGTCTCCGGCAGTTCAATCAGTTACTTCGGCGCTCGAGAAGCAACTTACATTGGAGACGTCAGCACCGTCGTCGTCTAAGGCTAATAGATACCCAGACCGGCCAGGATTCGGGACAGAGGGAAGGAAGATCCAAATTCGAGCAAATCATTTTCAAGTTCAAGTTGGGGTGCAAGAGATATATCACTACGATGTGGCGATCACTCCGGAGATTACTTCGAAGAAGGTTTCCAGAGATGTTATCGACTTGTTGGTTCGAGCACACCGTGAATCGATTCTGGGAAATCGCATGCCGGCTTATGATGGACGAAAAAGTCTTTTTACCGCCGGACCACTGCCTTTTGAAATTAAGGAATTTAAGGTCAAACTGGGAGATAACGATGAACCAGGGGCTTCTGCCACCCCAACTTCTTCCAGGAAAAAGCGTGAACGTGAGTTTAGGGTCACGATACGATTTGCTTCGAAGACTGACCTTCATCACCTTATTCAGTTTCTCAGTTGCCGTCAGTTGGACTGCCCTCAGGAAACTATTCAGGCCCTTGATGTTGTGCTGCGGGCTACACCTTCTGAGAAGTTGTTTTTTATTTGGTGTTGTTTTGTTGATGTCTCAGCTAGGGCATTTTATGAGGCCATTCCTGTCCTTGACTTCATTTCGAAGAATTTTAGACTCGATTTTCGCAGGCCTTTGCCTGATCAGGACCGAGTTAAGATTAAGAAAGCTTTGAGAGGAATCAAGGTCCAAGTTAATCATGGACAGAATATTAGACGTTACAAAGTCACTGCAGTCACAAAAGAACCGCTCAGAGCCTTAATGTTTAATGATGACACTGGAACAAAAAAATCTGTTGTTCAGTATTTCCAAGAGAAATATAATATTTCATTGCAGTATACACAGCTTTCTGCTCTTCAAGCTGGAAGTGACACTAAGCCAATTTTTTTGCCTATGGAGCTGTGTCAAATTGTTGCTGGACAGAGATACACTAAAAAATTAAATGAGGATCAAGTGACTGCTCTTTTAAAGGCCACATGTCAGCGTCCTCGTGAAAGGGAAGACTCTATCAGACAGATTGTGAGGCAGAGCAAATTCAGCGCGGACAAATTTGCCCGCCACTTTGACATTCAAGTGAGGGAGGATCTAGTGACACTTGATGCTCGTGTATTACCTCCTCCCATGCTTAAATACCATGGATCGGGTGGTGAATCACAGGTTCAACCAAGGATGGGCCAATGGAATATGATTAATAAGAAAATGATTGCTGGTGGTACCGTTGAACACTGGACTTGCCTAAACTTCTCTGGAAGAATACACAGAGATCTGTCATATCAACATTGTCAGGATTTGGCTGAAATGTGTAACAGGAAGGGAATGCGGTTTAAAGAAAGTCCTGCACTACCAATCACATCATCTCCAAGTGGTCAAATAGAGAATGCTCTTGTGAACCTGCATAAGCAGTGTAAACAGGCGAATGTAGGGCTCCAATTGTTGATTATAATTTTACCTGACGTCAAGGGGTCGTATGGGAAAATAAAGCGCATATGTGAAACAGAATTAGGAATAGTATCTCAGTGTTGTCAGCCCAAACAATTGTTAAAACCGAACAAGCAGCAATACCTTGAAAATCTGGCCCTCAAGATAAATGTGAAGGTGGGTGGTACAAACACGATATTGAATGATGCACTTATGCGTAGAATACCTCATGTCTCCGATGTACCGACGATAATATTTGGTGCAGATGTTACGCATCCCCAGCCAGGGGAGGACAGCAGTCCTTCCATTGCTGCAGTGGTGGCATCCATGGATTGGCCTTTTGTAACAAGGTACAAAGGAGTTGTTTCTGCGCAGAAACATAGGGACGAAATGATACAAGATCTTTATATTGGAGATCCGGCAGGGGGAATTCCACATTCAGGAATTATCAGGGAGTTGTTTCGTGCTTTCCGAAATTCAACTAATCGTAAACCGGAGAGAATTATATTCTACAGGTTGGGTTTGATCGAACTTAATGGGACATTTATGCTATTAGGCTCTTATTGTGTATCTAATTCATTTATCAATGTCAAATTTATTCTCAACAGAGATGGTGTAAGTGAAGGACAGTTTAATCAAGTGCTTCTCTATGAAATGGATGCCATAAGAAAGGCTTGTAACTCTTTAGAAGAGAATTATTTACCCCCAGTTACTTTTGTGGTGGTCCAAAAGAGGCACCACACTCGGTTGTTCCCTGCTGTTCACGGAGCAGGAGCACGTGATACTACAGATAAAAGTGGAAATATAATGCCAGGTACTGTAGTTGATACAACTATATGTCATCCTCGGGAATTTGACTTTTATCTGAATAGTCATGCTGGAATTCAAGTAATGCATTACCCTTAA 5508 0.4444 MAPFPSENGVEGDDEREEEDEEEEEDEEEVEDEEDEEEPRLKYQRMGGSIPSLLASDAASCIAVAERMIALGTHGGTVHILDFLGNQSWVDQIYGTEQSVLLRSSFIDTLFKCMVKEFSAHASVVNDLSFDTEGEYIGSCSDDGSVVINSLFTDEKLKFDYHRPMKAVALDPDYAKKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGSIHAVKWRASLVAWANDAGVKVYDTANDQRVTFIEKPRGSPRPELLLPHLVWQDDTLLVIGWGTSVKIASIRTIRAANGSFRQVPLSGVAQVDIVASFQTSYFISGLAPFGDALVVLAYIPGEDGDKDFSSSAPSRQVAVMLAVSGLQHGWHEKALAVVESGQGRSELLDEVGSRYLDHLIVERKYSEAASLCPKLLRGSAPAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNSSFHKDLLSTVKSWPSVIYSALPVISAIEPQLNTSSMTDSLKEALAELYVINGQYEKAFLLYADLMKPEVFDFIDKHNLHDAIRGKIVQLMMLDCKRAVPLLIQNRDLISPPEVVKQLLNADDKSDRRYFLHLYLHSLFEVNPHAGKEFHDMQVELYADYDPKMLLPFLRSSQHYTLEKAYDICIKRDLLREQVFILGRMGNSKQALAVIINHLGDIEEAVEFVTMQHDDELWEELIKQCLHKPEMVGILLEHTVGNLNPLYIVNKVPNGLEIPRLRDRLVKIITDYRTETSLRHGCNDILKADCVNLLIKYYNEARHGVSLGNEEDETRVKMSDTRASQNVSVIVFFCCHGYHTTCLMDSSYTSSNKKETTSLEAGMYDGYNGYEDDASDDVEDEETKSGTERIVSVSSNPTPPISARNDNLVVYPIPSRASFENPQYSRCLRETCLTKKLLNSLLKESLEEPFFIKFQSPQTTLPNLSPATMSRRGSQHSDFNRPPQSSASSSTAGGRGRGRGRGRGHSAPSPPAQTSYPPPAQTSSAASLAPSTAAPPRAVAPVPASAGPGPSRPPPVQASPAPVSGSGAVTTTAPSPAVQSVTSALEKQLTLETSAPSSSKANRYPDRPGFGTEGRKIQIRANHFQVQVGVQEIYHYDVAITPEITSKKVSRDVIDLLVRAHRESILGNRMPAYDGRKSLFTAGPLPFEIKEFKVKLGDNDEPGASATPTSSRKKREREFRVTIRFASKTDLHHLIQFLSCRQLDCPQETIQALDVVLRATPSEKLFFIWCCFVDVSARAFYEAIPVLDFISKNFRLDFRRPLPDQDRVKIKKALRGIKVQVNHGQNIRRYKVTAVTKEPLRALMFNDDTGTKKSVVQYFQEKYNISLQYTQLSALQAGSDTKPIFLPMELCQIVAGQRYTKKLNEDQVTALLKATCQRPREREDSIRQIVRQSKFSADKFARHFDIQVREDLVTLDARVLPPPMLKYHGSGGESQVQPRMGQWNMINKKMIAGGTVEHWTCLNFSGRIHRDLSYQHCQDLAEMCNRKGMRFKESPALPITSSPSGQIENALVNLHKQCKQANVGLQLLIIILPDVKGSYGKIKRICETELGIVSQCCQPKQLLKPNKQQYLENLALKINVKVGGTNTILNDALMRRIPHVSDVPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPFVTRYKGVVSAQKHRDEMIQDLYIGDPAGGIPHSGIIRELFRAFRNSTNRKPERIIFYRLGLIELNGTFMLLGSYCVSNSFINVKFILNRDGVSEGQFNQVLLYEMDAIRKACNSLEENYLPPVTFVVVQKRHHTRLFPAVHGAGARDTTDKSGNIMPGTVVDTTICHPREFDFYLNSHAGIQVMHYP 1835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01096 1835 SUPERFAMILY WD40 repeat-like 58 284 IPR036322 GO:0005515
Vian5g01096 1835 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 1068 1830 - -
Vian5g01096 1835 Pfam PAZ domain 1277 1383 IPR003100 GO:0005515
Vian5g01096 1835 Gene3D Tetratricopeptide repeat domain 499 768 IPR011990 GO:0005515
Vian5g01096 1835 Pfam Argonaute linker 2 domain 1393 1439 IPR032472 -
Vian5g01096 1835 CDD Piwi_ago-like 1411 1830 IPR045246 -
Vian5g01096 1835 Gene3D - 8 301 IPR015943 GO:0005515
Vian5g01096 1835 SMART PAZ_2_a_3 1256 1383 IPR003100 GO:0005515
Vian5g01096 1835 MobiDBLite consensus disorder prediction 1013 1032 - -
Vian5g01096 1835 Pfam N-terminal domain of argonaute 1087 1229 IPR032474 -
Vian5g01096 1835 MobiDBLite consensus disorder prediction 860 874 - -
Vian5g01096 1835 MobiDBLite consensus disorder prediction 843 874 - -
Vian5g01096 1835 ProSiteProfiles PAZ domain profile. 1256 1367 IPR003100 GO:0005515
Vian5g01096 1835 SMART Piwi_a_2 1539 1835 IPR003165 GO:0003676
Vian5g01096 1835 SMART CLH_2 559 706 IPR000547 GO:0006886|GO:0016192
Vian5g01096 1835 SUPERFAMILY PAZ domain 1251 1406 IPR036085 GO:0005515
Vian5g01096 1835 Pfam Piwi domain 1540 1709 IPR003165 GO:0003676
Vian5g01096 1835 Pfam Piwi domain 1725 1831 IPR003165 GO:0003676
Vian5g01096 1835 CDD PAZ_argonaute_like 1255 1366 - -
Vian5g01096 1835 Pfam Region in Clathrin and VPS 559 702 IPR000547 GO:0006886|GO:0016192
Vian5g01096 1835 Coils Coil 16 38 - -
Vian5g01096 1835 Gene3D paz domain 1250 1371 - -
Vian5g01096 1835 MobiDBLite consensus disorder prediction 1035 1073 - -
Vian5g01096 1835 MobiDBLite consensus disorder prediction 930 1085 - -
Vian5g01096 1835 Gene3D - 1431 1603 - -
Vian5g01096 1835 MobiDBLite consensus disorder prediction 1 41 - -
Vian5g01096 1835 Pfam Mid domain of argonaute 1450 1528 IPR032473 -
Vian5g01096 1835 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 559 706 IPR000547 GO:0006886|GO:0016192
Vian5g01096 1835 MobiDBLite consensus disorder prediction 930 965 - -
Vian5g01096 1835 SUPERFAMILY Ribonuclease H-like 1428 1828 IPR012337 -
Vian5g01096 1835 FunFam Argonaute 10 1431 1602 - -
Vian5g01096 1835 SMART WD40_4 111 150 IPR001680 GO:0005515
Vian5g01096 1835 SMART WD40_4 199 235 IPR001680 GO:0005515
Vian5g01096 1835 MobiDBLite consensus disorder prediction 11 37 - -
Vian5g01096 1835 ProSiteProfiles Piwi domain profile. 1539 1835 IPR003165 GO:0003676
Vian5g01096 1835 FunFam Vacuolar protein sorting-associated protein 41 homolog 500 765 - -
Vian5g01096 1835 Gene3D - 1609 1835 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01096 Vian-Chr5 32892961 32923424 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01096 1026 1835 Eukaryotic Initiation Factors Gene Family AT1G48410 50.231 0.0 802
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01096 K20184 K11593 gmx:100799033 1079.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01096 5 32892961 32923424 Vian5g01096 5 32892961 32923424 ECH